CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.184e-17
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K+++IGDSGVGKS LL R                    +T+++D K IKLQ+WDTAGQE++ +IT +YY+GA+G L+VY++ D +SFN+
Sbjct:   11 LCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNN 101          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.184e-17
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            K++L+GDSGVGK+C L++                   + + + +DG R+KLQIWDTAGQERFR++T AYYR A  +LL+YD+T++SSF++
Sbjct:   31 KVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDN 120          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.184e-17
Identity = 42/90 (46.67%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQIWDTAGQERFR++T AYYR A  +LL+YD+T++ SF++
Sbjct:   66 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDN 155          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.184e-17
Identity = 42/90 (46.67%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQIWDTAGQERFR++T AYYR A  +LL+YD+T++ SF++
Sbjct:   69 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDN 158          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K L+IG++G GKSCLL +                    + I + GK +KLQIWDTAGQERFR++T +YYRGA G LLVYD+T   ++N+
Sbjct:    8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNA 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K L+IG++G GKSCLL +                    + I + GK +KLQIWDTAGQERFR++T +YYRGA G LLVYD+T   ++N+
Sbjct:    8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNA 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K L+IG++G GKSCLL +                    + I + GK +KLQIWDTAGQERFR++T +YYRGA G LLVYD+T   ++N+
Sbjct:    8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNA 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K L+IG++G GKSCLL +                    + I + GK +KLQIWDTAGQERFR++T +YYRGA G LLVYD+T   ++N+
Sbjct:    8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNA 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 42/90 (46.67%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQ+WDTAGQERFR++T AYYR A  +LL+YDVT+++SF++
Sbjct:   65 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDN 154          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.354e-17
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            + K++LIGDS VGKS +L R                  + RT+ +D K +K QIWDTAGQER+R +T+AYYRGA+G +LVYD+T   +F+
Sbjct:   17 VFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFD 106          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RB11B_DICDI2.184e-1746.15Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RAB37_MOUSE2.184e-1746.67Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RAB26_RAT2.184e-1746.67Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB26_MOUSE2.184e-1746.67Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB4A_RAT3.725e-1747.25Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB4A_MOUSE3.725e-1747.25Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
RAB4A_HUMAN3.725e-1747.25Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_BOVIN3.725e-1747.25Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB26_HUMAN3.725e-1746.67Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RB11A_LOTJA6.354e-1746.67Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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