CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RASEF_HUMAN (RAS and EF-hand domain-containing protein OS=Homo sapiens GN=RASEF PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.767e-15
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            K++L GD+ VGKS  L+R                  +++T+ +DG+R  LQ+WDTAGQERFR+I  +Y+R A G+LL+YDVT E SF
Sbjct:  543 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF 629          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB39A_MOUSE (Ras-related protein Rab-39A OS=Mus musculus GN=Rab39 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKI----RTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +L++IGDS VGKSCLL R                   +    R +E++ GKRIKLQ+WDTAGQERFR+IT +YYR ++G  LV+D+T+  SF
Sbjct:   10 RLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSF 101          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB39A_HUMAN (Ras-related protein Rab-39A OS=Homo sapiens GN=RAB39 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKI----RTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +L++IGDS VGKSCLL R                   +    R +E++ GKRIKLQ+WDTAGQERFR+IT +YYR ++G  LV+D+T+  SF
Sbjct:   10 RLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSF 101          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB33B_MOUSE (Ras-related protein Rab-33B OS=Mus musculus GN=Rab33b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNS------NCSLHFIIRSL 463
            + K+++IGDS VGK+CL  R                  + R +++DG+RIK+Q+WDTAGQERFR ++   YYR    ++ VYD+T+ +SF+S       C  H +   +
Sbjct:   33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI 141          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB40B_HUMAN (Ras-related protein Rab-40B OS=Homo sapiens GN=RAB40B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            L+K LL+GDS VGK  +L                    K  TI LDG+R+KLQ+WDT+GQ RF TI  +Y RGA G++LVYD+ +  SF+
Sbjct:   14 LLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFD 103          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB40B_MOUSE (Ras-related protein Rab-40B OS=Mus musculus GN=Rab40b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.260e-14
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            L+K LL+GDS VGK  +L                    K  TI LDG+R+KLQ+WDT+GQ RF TI  +Y RGA G++LVYD+ +  SF+
Sbjct:   14 LLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDHKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVVLVYDIANRWSFD 103          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RASEF_MOUSE (RAS and EF-hand domain-containing protein homolog OS=Mus musculus GN=Rasef PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.260e-14
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            K++L GD+ VGKS  L+R                  +++T+ +DG++  LQ+WDTAGQERFR+I  +Y+R A G+LL+YDVT E SF
Sbjct:  430 KIVLAGDAAVGKSSFLMRLCKNEFQGNTSATLGVDFQMKTLIVDGEQTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF 516          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.260e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKI-RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            K +L+GDSGVGK+  L++                     + + +DG R+KLQIWDTAGQERFR++T AYYR A  +LL+YDVT+++++++
Sbjct:  192 KTILLGDSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDN 281          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB33B_CHICK (Ras-related protein Rab-33B OS=Gallus gallus GN=RAB33B PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.952e-14
Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNS------NCSLHFIIRSL 463
            + K+++IGDS VGK+CL  R                  + R + +DG+RIK+Q+WDTAGQERFR ++   YYR    ++ VYD+T+ +SF+S       C  H +   +
Sbjct:   31 IFKIIVIGDSNVGKTCLTYRFCAGRFPQRTEATIGVDFRERAVTIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNLASFHSLPSWIEECKQHLLTNDI 139          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB43L_HUMAN (Putative Rab-43-like protein ENSP00000330714 OS=Homo sapiens PE=5 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.855e-14
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  275 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            ++T+E+ GKR+KLQIWDTAGQERFRTIT +YYR A G +L YD+T  SSF S
Sbjct:   26 MKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLS 77          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RASEF_HUMAN7.767e-1545.98RAS and EF-hand domain-containing protein OS=Homo ... [more]
RB39A_MOUSE1.014e-1447.83Ras-related protein Rab-39A OS=Mus musculus GN=Rab... [more]
RB39A_HUMAN1.014e-1447.83Ras-related protein Rab-39A OS=Homo sapiens GN=RAB... [more]
RB33B_MOUSE1.014e-1436.70Ras-related protein Rab-33B OS=Mus musculus GN=Rab... [more]
RB40B_HUMAN1.730e-1445.56Ras-related protein Rab-40B OS=Homo sapiens GN=RAB... [more]
RB40B_MOUSE2.260e-1445.56Ras-related protein Rab-40B OS=Mus musculus GN=Rab... [more]
RASEF_MOUSE2.260e-1444.83RAS and EF-hand domain-containing protein homolog ... [more]
RAB26_DROME2.260e-1443.33Ras-related protein Rab-26 OS=Drosophila melanogas... [more]
RB33B_CHICK2.952e-1436.70Ras-related protein Rab-33B OS=Gallus gallus GN=RA... [more]
RB43L_HUMAN3.855e-1467.31Putative Rab-43-like protein ENSP00000330714 OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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