CK934230

Overview
NameCK934230
Unique NameCK934230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.911e-40
Identity = 88/159 (55.35%), Postives = 107/159 (67.30%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKND T          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.712e-40
Identity = 92/171 (53.80%), Postives = 113/171 (66.08%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHV--EASKSDD--RATS-----GVDDDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE*KDLK 628
            +S KI L SSD E+FEV+EAVA + + I HMI+DDCAD  IPL NVT  IL+ VIEYCKKHV  +   SDD   ATS        ++L+ WD +F+K  D  T+  LILA NYLN++ LL LTCQTVAD +K  +PEE+R+ FNI+ND TP         N WAFE  DLK
Sbjct:    2 SSNKIVLTSSDDESFEVEEAVARKLKVIAHMIDDDCADKAIPLENVTGNILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE--DLK 170          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.535e-39
Identity = 84/152 (55.26%), Postives = 110/152 (72.37%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQW 604
            + L+SSD + FE+++ +A  S TIK+MIED   +D+ IPLPNVTS IL KV++YC+ H +  + + DD+      DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKND TP         N+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.647e-39
Identity = 84/152 (55.26%), Postives = 109/152 (71.71%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQW 604
            + L+SSD + FE+++ +A  S TIK+MIED   +D  IPLPNVTS IL KV++YC+ H +  + + DD+      DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKND TP         N+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.258e-38
Identity = 90/189 (47.62%), Postives = 112/189 (59.26%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVE----------------------ASKSDD----RATSGVD------DDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            +SKKI L SSDGE+F+V+E VA + Q + H+IEDDCA N IP+PNVT +IL+KVIEYCKKHVE                        K DD     +T G D      + L  WD  F+K  D  T+FD+ILAANYLN++ L DL  +T+AD IK  TPEE+R+ FNI+ND TP         N W FE
Sbjct:    2 SSKKIVLTSSDGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEYCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.244e-38
Identity = 82/156 (52.56%), Postives = 107/156 (68.59%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            ++KKI LKSS+G+ FE++E  A + QTI HMIE +C DN I +  +TS+IL  VIEYC KH       D A    DDDL+ WD +F++ D++T+F L  AAN+LN KSLL L  QTVADMIKG TP+++R+ FNI+NDLTP         N+WAFE
Sbjct:    2 STKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKH-----HVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.177e-36
Identity = 81/156 (51.92%), Postives = 99/156 (63.46%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFV-KVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAF 610
            +S KI L SSDGE+FE+DEAVA +   I HM+ED+CA   IPL NVT  ILSK+IEY K HV     +D        +L +WD  F+ K+D  T+F +ILAANYLN + LL    QTVAD IK KTPEE+R+ FNI+ND TP         N W F
Sbjct:    2 SSNKILLTSSDGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPSEEDE-DEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.545e-33
Identity = 76/156 (48.72%), Postives = 98/156 (62.82%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAF 610
            +SKKI L SSD E FE+DEAVA + Q + HMI+DDCAD  I L NVT KIL+ +IEYCKKHV+  ++         ++   WD +FVK +D  TLF L+ AA+YL +  L +L  Q +AD    KT  EIR+ FNI+ND TP         N+WAF
Sbjct:    2 SSKKIVLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKHVDDVEA--------KNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.047e-33
Identity = 76/156 (48.72%), Postives = 99/156 (63.46%), Query Frame = 2
Query:  155 KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADN-GIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGV----DDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWA 607
            KI L SSD E F VD+ +A  S  IK+M+ED    N  IPLPNV+S +L KV+E+C+ H     S     S +      D+  WD  F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI ND TP         N+WA
Sbjct:    3 KIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.485e-28
Identity = 67/121 (55.37%), Postives = 84/121 (69.42%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 508
            ++KKI LKSSDG+ FE++E  A + QTI HMIE +C DN IP+ NVTS+IL  VIEYC KH       D A    D+DLK WD +F++ DQ T+F L+ AA  L+IKSLL L  QTVADM+
Sbjct:    2 STKKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKH-----HVDAANPCSDEDLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVADMV 117          
The following BLAST results are available for this feature:
BLAST of CK934230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1_BOVIN3.911e-4055.35S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
ASK16_ARATH8.712e-4053.80SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]
SKP1A_DICDI2.535e-3955.26SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
SKP1B_DICDI5.647e-3955.26SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
ASK19_ARATH1.258e-3847.62SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK8_ARATH6.244e-3852.56SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
ASK18_ARATH1.177e-3651.92SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK17_ARATH3.545e-3348.72SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_SCHPO6.047e-3348.72Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
ASK7_ARATH4.485e-2855.37SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_F08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934230 ID=CK934230; Name=CK934230; organism=Citrus sinensis; type=EST; length=824bp
GGGGGTCCGTTCCGAGAACAGACACCTTTTCGAAGGGCTTTTCTTCTCTT
CTCTTCATCTTTATCCTCCTTTTATATATAAATATAATAAATATCAAGAA
AGTTAGGGTTTCAAGAGTGTGTTGGATCGATCGATCAGAATGTCAACGAG
TAAGAAAATCACGCTGAAGAGCTCGGATGGAGAGGCGTTCGAGGTCGATG
AAGCAGTGGCGTTGGAATCGCAGACGATCAAGCATATGATTGAGGACGAT
TGCGCCGACAACGGAATCCCTTTGCCTAACGTTACCAGTAAGATCCTCTC
TAAGGTCATCGAGTACTGCAAGAAGCACGTCGAGGCATCTAAGTCCGACG
ATCGGGCCACTAGCGGCGTCGATGATGATCTCAAGGCTTGGGATACCGAT
TTCGTCAAAGTCGATCAGGCCACTCTCTTTGATCTTATTCTTGCGGCAAA
CTACCTGAACATCAAGAGCTTGCTGGACTTAACTTGCCAGACTGTTGCAG
ACATGATTAAGGGAAAGACTCCAGAGGAGATCCGCAAGACATTCAATATC
AAGAACGACCTTACCCCAGAAGAGGAGGAAGAGGTTCGTCGGGAGAATCA
GTGGGCTTTTGAGTGAAAGGATCTCAAATGACCAATTTGTAATTGTGTCT
TTTCTTTTTTGTTTTGCCTTCTTTTTGTTGTTGCTGCTGACTCAAATGTC
TTTAGCTGGTAAAAGCATCAAACCATTATTGTTTTAATGTCATATCACCC
CAACCTTCTCTGTATCATTAATTGTGAAGTCCTTTTGGATCTAACAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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