CK934287

Overview
NameCK934287
Unique NameCK934287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934287 vs. ExPASy Swiss-Prot
Match: ATPH_ACOAM (ATP synthase subunit c, chloroplastic OS=Acorus americanus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.356e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK934287 vs. ExPASy Swiss-Prot
Match: ATPH_OLIPU (ATP synthase subunit c, chloroplastic OS=Olimarabidopsis pumila GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK934287 vs. ExPASy Swiss-Prot
Match: ATPH_DRANE (ATP synthase subunit c, chloroplastic OS=Draba nemorosa GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK934287 vs. ExPASy Swiss-Prot
Match: ATPH_CRUWA (ATP synthase subunit c, chloroplastic OS=Crucihimalaya wallichii GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK934287 vs. ExPASy Swiss-Prot
Match: ATPH_CAPBU (ATP synthase subunit c, chloroplastic OS=Capsella bursa-pastoris GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK934287 vs. ExPASy Swiss-Prot
Match: ATPH_ARATH (ATP synthase subunit c, chloroplastic OS=Arabidopsis thaliana GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK934287 vs. ExPASy Swiss-Prot
Match: ATPH_ARAHI (ATP synthase subunit c, chloroplastic OS=Arabis hirsuta GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK934287 vs. ExPASy Swiss-Prot
Match: ATPH_WELMI (ATP synthase subunit c, chloroplastic OS=Welwitschia mirabilis GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK934287 vs. ExPASy Swiss-Prot
Match: ATPH_SOYBN (ATP synthase subunit c, chloroplastic OS=Glycine max GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK934287 vs. ExPASy Swiss-Prot
Match: ATPH_PHAVU (ATP synthase subunit c, chloroplastic OS=Phaseolus vulgaris GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
The following BLAST results are available for this feature:
BLAST of CK934287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_ACOAM3.356e-2580.25ATP synthase subunit c, chloroplastic OS=Acorus am... [more]
ATPH_OLIPU4.383e-2579.01ATP synthase subunit c, chloroplastic OS=Olimarabi... [more]
ATPH_DRANE4.383e-2579.01ATP synthase subunit c, chloroplastic OS=Draba nem... [more]
ATPH_CRUWA4.383e-2579.01ATP synthase subunit c, chloroplastic OS=Crucihima... [more]
ATPH_CAPBU4.383e-2579.01ATP synthase subunit c, chloroplastic OS=Capsella ... [more]
ATPH_ARATH4.383e-2579.01ATP synthase subunit c, chloroplastic OS=Arabidops... [more]
ATPH_ARAHI4.383e-2579.01ATP synthase subunit c, chloroplastic OS=Arabis hi... [more]
ATPH_WELMI5.724e-2579.01ATP synthase subunit c, chloroplastic OS=Welwitsch... [more]
ATPH_SOYBN5.724e-2579.01ATP synthase subunit c, chloroplastic OS=Glycine m... [more]
ATPH_PHAVU5.724e-2579.01ATP synthase subunit c, chloroplastic OS=Phaseolus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004261_A10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934287 ID=CK934287; Name=CK934287; organism=Citrus sinensis; type=EST; length=685bp
GGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTCTAGTGCGAG
GGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGG
GTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACTG
CTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGGA
AAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAAC
AATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTG
TTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTTCTCTTAT
TTATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTC
CTCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACC
AGTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTA
AGTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGCC
CCTAATACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAATTC
AAAGAAAGGATTTCGAAATCGAATTTTTGACCCTGTTTCGAAATAGGTAA
ATTACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top