CK934289

Overview
NameCK934289
Unique NameCK934289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934289 vs. ExPASy Swiss-Prot
Match: RL21_SULTO (50S ribosomal protein L21e OS=Sulfolobus tokodaii GN=rpl21e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 2 
Query:   83 GLRSRTRDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHV 355
            G R+RTR L  +  R++G +P LS  +  +K GDYV +K+N +VHKGMPH+ YHG+ G +    KR     +   +G++  +K I VR EH+
Sbjct:    7 GYRTRTRKLLTKNVRERGAVPRLSLLMEEFKEGDYVVIKINPSVHKGMPHRRYHGKVGVIQG--KRGKAYIVRVTLGDK--EKVIIVRPEHL 94
[Close]
BLAST of CK934289 vs. ExPASy Swiss-Prot
Match: RL21_AERPE (50S ribosomal protein L21e OS=Aeropyrum pernix GN=rpl21e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 2 
Query:   74 AGHGLRSRTRDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHK-GMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQP 361
            A  G R+RTR L  +P R+KG IP LSTYLR Y++GD V + +N +    GMPH+ +HG TG V  V KR    E+   +G +  +K + V   H++P
Sbjct:    4 APRGYRNRTRRLLRKPVREKGSIPRLSTYLREYRVGDKVAIIINPSFPDWGMPHRRFHGLTGTV--VGKRGEAYEVEVYLGRK--RKTLFVPPVHLKP 97
The following BLAST results are available for this feature:
BLAST of CK934289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL21_SULTO3.349e-1141.3050S ribosomal protein L21e OS=Sulfolobus tokodaii ... [more]
RL21_AERPE3.349e-1142.8650S ribosomal protein L21e OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_A12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934289 ID=CK934289; Name=CK934289; organism=Citrus sinensis; type=EST; length=761bp
GGGGGCTACACACACTCACATCTCTTTCCTCTTCTCCAGAGAGAAAAAAG
GAGCAGAGTACTCAAACATGCCGGCAGGTCACGGTTTGAGGTCCCGAACA
AGGGATTTGTTCGCACGCCCCTTCAGAAAGAAGGGTTACATCCCCTTGTC
CACTTACCTTAGGACTTACAAAATCGGCGACTACGTTGACGTCAAAGTGA
ACGGCGCCGTTCACAAAGGTATGCCCCACAAGTTCTACCATGGGCGTACA
GGCCGTGTCTGGAATGTCACCAAGCGCGCCATCGGCGTGGAGATTAACAA
GCAGGTTGGTAACAGGATCATCAAGAAGAGGATTCATGTTCGTGTGGAGC
ATGTTCAACCTTCAAGGTGTACCGAGGAGTTCAAGCTGAGGAAGAAGAAG
AATGATGAGCTCAAGGCAGATGCTAAGGCAAGAGGTGAGGTCATCAGTAC
AAAGAGGCAGCCAAAGGGCCCTAAACCAGGTTTCATGGTGGAAGGTGCAA
CATTGGAAACTGTCACTCCTATTCCTTATGATGTCGTCAATGATCTTAAG
GGTGGTTACTAGGTTATCTTTTTGGTATTGTTGCTGTTTTGTTACTTGTT
GCAGACTTTTCTGGACATGGTCTTATTTGGATGTATTTTCATCCTTATTA
GTTTTGTTTTTGGAGAGGAACTGCAATTGCAGAGATGTTTATTTTTAATC
TTCATTTTATATTAGAAACAAGAGATGTTTTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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