CK934291

Overview
NameCK934291
Unique NameCK934291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1671 contig Csv1_Contig1671:1..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK934291 vs. ExPASy Swiss-Prot
Match: PTAD2_HUMAN (Protein tyrosine phosphatase-like protein PTPLAD2 OS=Homo sapiens GN=PTPLAD2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 44/203 (21.67%), Postives = 95/203 (46.80%), Query Frame = 3 
Query:  171 RRLYLTAYNWTVFAGWAQV---LYLALKTLNESGHENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYVTWGILWSFPQTQNHXXXXXXXXXXXXTEIIRYSFFGMKEALGFAPSWLLWLRYSTFLLLYPSGITSEVGLIYTALPYIKESETYCLRMPNKWNFSFDY---FYAAILVLGFYVPGSPHMYT 761
            +  YL  Y    F G + +   + +   +  +    + + A+   ++L Q+ ++LE+LH  +G+  + +     Q++ R+ + + ++ S  + Q               +++RY++  M   +G + + L WL  + ++ +YP  + +E   IY +LPY +   TY  ++P   +  F Y    Y  +L +G Y   S H+Y+
Sbjct:   16 KNAYLFIYYLIQFCGHSWIFTNMTVRFFSFGKDSMVDTFYAIGLVMRLCQSVSLLELLHIYVGIESNHLLPRFLQLTERIIILFVVITSQEEVQEKYVVCVLFVFWNLLDMVRYTY-SMLSVIGISYAVLTWLSQTLWMPIYPLCVLAEAFAIYQSLPYFESFGTYSTKLPFDLSIYFPYVLKIYLMMLFIGMYFTYS-HLYS 216
The following BLAST results are available for this feature:
BLAST of CK934291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PTAD2_HUMAN8.834e-1121.67Protein tyrosine phosphatase-like protein PTPLAD2 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_B03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934291 ID=CK934291; Name=CK934291; organism=Citrus sinensis; type=EST; length=850bp
GGGGGAAAGTGGTTGAGCAGCTTACCTGTCTCTTCTCACTTCGCACCCAT
CCCCATCTCCCTTAATTGCTGTCGTTTTAAATGGTCTAAATTTTCTCTTT
TAATTGCTTCCCAGTTTACAATCTTTCAATTTTCAATACAAAACAGATGG
CGGGTTGTTTGTCGCTTCTCAGACGCCTGTACCTCACTGCCTACAACTGG
ACCGTCTTTGCCGGATGGGCCCAGGTTTTGTACCTTGCTTTGAAGACCTT
AAACGAGTCCGGCCACGAAAATGTCTACAAAGCCGTCGAAAGGCCTCTCC
AGCTCGCCCAAACCGCCGCCGTTTTGGAGATTCTTCATGGTCTTCTAGGC
TTGGTGAGATCTCCAATAACAGCTACACTGCCACAAATTAGCTCTAGATT
GTATGTTACATGGGGCATTTTATGGAGTTTTCCTCAGACTCAGAATCATA
TACTTGTTAGTTCATTGGTGATCAGCTGGTCCTTAACTGAGATTATTCGC
TACTCTTTCTTTGGCATGAAGGAGGCACTTGGTTTTGCACCTTCATGGCT
CTTGTGGCTGAGGTATAGCACATTTTTGCTGTTGTATCCATCTGGCATTA
CGAGTGAAGTTGGTCTTATTTACACTGCCCTTCCATACATAAAAGAATCC
GAGACGTATTGTCTTAGAATGCCAAACAAATGGAATTTCTCTTTTGACTA
CTTCTACGCTGCAATTCTTGTGCTTGGATTCTATGTGCCAGGTAGTCCTC
ATATGTATACATATATGCTTGGGCAGAGGAAGAAAGCCCTTTCGAAATCG
AAAAAAGAGTAAAATGGTTTTTTAACTGCAATGNNNNNNAGTGTATCCTA
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