CK934328

Overview
NameCK934328
Unique NameCK934328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934328 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.483e-50
Identity = 91/160 (56.88%), Postives = 114/160 (71.25%), Query Frame = 2
Query:  167 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 634
            L  +IS + F+++L++RND  C  + FYTYDAF+ AA+AFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYCF+ E + PS YC  +  +PC    +YYGRGPIQ+SWNYNY +C           NNPDL+ATDPV+SFK+A+WFWM
Sbjct:   68 LSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQN-PSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQC--GRAIGVDLLNNPDLVATDPVISFKTALWFWM 224          
BLAST of CK934328 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.704e-49
Identity = 92/161 (57.14%), Postives = 112/161 (69.57%), Query Frame = 2
Query:  164 ELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 634
            ++  IIS  MFD +L++RND  C  + FYTY+AFI AA++F GFG +G+ T RKRE+AAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC     +PC    KYYGRGPIQ+S+NYNY  C           NNPDL+AT+ V+SFKSAIWFWM
Sbjct:   84 DISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPC--GRAIGQNLLNNPDLVATNAVVSFKSAIWFWM 242          
BLAST of CK934328 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.348e-48
Identity = 93/160 (58.13%), Postives = 111/160 (69.38%), Query Frame = 2
Query:  167 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 634
            +  I+SR +FD +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYCF  E    S+YC P+  +PC  GK YYGRGPIQLS NYNY               NPDL+ATDP +SFK+A+WFWM
Sbjct:   80 VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWM 237          
BLAST of CK934328 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.221e-47
Identity = 87/157 (55.41%), Postives = 111/157 (70.70%), Query Frame = 2
Query:  176 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 634
            ++S+E+F+ LL +RND  CPARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYCF  E+   + YC P+  +PC    KY+GRGPIQLS+NYNY              NNP+L+A+DPV+SFK+A+WFWM
Sbjct:   89 VVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWM 243          
BLAST of CK934328 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.640e-47
Identity = 90/160 (56.25%), Postives = 108/160 (67.50%), Query Frame = 2
Query:  167 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 634
            +  IIS   FD +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYCF  E    +DYC P+  +PC    +YYGRGPIQLS NYNY               NPDL+ATDP +SFK+A+WFWM
Sbjct:   25 VSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWM 182          
BLAST of CK934328 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 186.808 bits (473), Expect = 7.914e-47
Identity = 92/160 (57.50%), Postives = 109/160 (68.12%), Query Frame = 2
Query:  167 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 634
            +  I+SR +FD +L +RND  C A+GFYTYDAF+ AA AF GFG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYCF  E    S+YC P+  +PC  GK YYGRGPIQLS NYNY               NPDL+ATDP +SFK+A+WFWM
Sbjct:   77 VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWM 234          
BLAST of CK934328 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.763e-46
Identity = 90/160 (56.25%), Postives = 107/160 (66.88%), Query Frame = 2
Query:  167 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 634
            +  I+SR  FD +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYCF  E    SDYC P+  +PC    +YYGRGPIQLS NYNY               NPDL+ATD  + FK+AIWFWM
Sbjct:   25 VSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLANPDLVATDATVGFKTAIWFWM 182          
BLAST of CK934328 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.671e-45
Identity = 87/162 (53.70%), Postives = 107/162 (66.05%), Query Frame = 2
Query:  167 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISE--VSPPSDYC--DPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 634
            +  I+SR +FD +L +RND  CPA+ FYTYDAF+ AA AFP F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYCF  E   +  SDYC     +PC    KYYGRGPIQ+S+NYNY              +NPDL+A+D  +SFK+A WFWM
Sbjct:   79 VASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWM 238          
BLAST of CK934328 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 3.676e-44
Identity = 85/161 (52.80%), Postives = 108/161 (67.08%), Query Frame = 2
Query:  167 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCD--PNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 634
            +  IIS  +FD +L +RND+ C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGWP AP G Y+WGYCF  E +  +  YC+  P +PC    KYYGRGPIQ+++NYNY              NNPDL+A+D  +SFK+A WFWM
Sbjct:   76 VASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWM 234          
BLAST of CK934328 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.190e-44
Identity = 82/160 (51.25%), Postives = 105/160 (65.62%), Query Frame = 2
Query:  167 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 634
            +  +IS+ +F+ +L +RND  C A+GFYTY+AFI A + F  FG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+  E   P DYC     +PC    KY+GRGPIQ+S+NYNY              NNPDL+A D V+SFK+A+WFWM
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNY--GAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWM 162          
The following BLAST results are available for this feature:
BLAST of CK934328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI2_PEA4.483e-5056.88Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI3_TOBAC1.704e-4957.14Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIA_SECCE9.348e-4858.13Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI9_ORYSJ1.221e-4755.41Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE4.640e-4756.25Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI1_HORVU7.914e-4757.5026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI2_HORVU1.763e-4656.2526 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_ORYSJ5.671e-4553.70Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_ORYSJ3.676e-4452.80Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC8.190e-4451.25Basic endochitinase (Fragment) OS=Solanum lycopers... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004260_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934328 ID=CK934328; Name=CK934328; organism=Citrus sinensis; type=EST; length=634bp
GGGGATAATTGATATCATAACTGTTGCTTTCAAAATGAGGCTTATTGGGT
CCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGCTCAGCA
CAGAACTGTGGAAGCGGCGTTGTGTACGGTGGACGTGATACCGGCCATGG
GACGCATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGATG
ACTTGCTTGAGTATAGAAATGATGAACGATGCCCTGCCAGAGGCTTCTAC
ACTTATGATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAA
CTCTGGAAATGAAACCATGCGTAAAAGAGAAATCGCTGCCTTTTTTGCCC
AAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGCGAA
TATGCTTGGGGATATTGCTTTATAAGCGAAGTTAGCCCTCCGTCCGACTA
CTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAA
TTCAACTCTCTTGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAGGG
CTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGT
ACTATCATTCAAGTCAGCAATCTGGTTCTGGATG
back to top