CK934330
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934330 vs. ExPASy Swiss-Prot
Match: RS12_MOUSE (40S ribosomal protein S12 OS=Mus musculus GN=Rps12 PE=1 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 2.336e-36 Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 2 Query: 152 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 514 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YVKLV+AL A+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CK934330 vs. ExPASy Swiss-Prot
Match: RS12_CYAPA (40S ribosomal protein S12 OS=Cyanophora paradoxa GN=RPS12 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.985e-36 Identity = 69/118 (58.47%), Postives = 92/118 (77.97%), Query Frame = 2 Query: 161 MDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 514 MD+MTAL+ VL+K++ GL RGLHE AK +++ +AQLCVLA + N+P Y +LV+ALCA+H ++L+ VP K LGEW GLCKID EGKARKVVGCSC V+ FGEES+ V+ +++K Sbjct: 17 MDVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEHGINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLK 134
BLAST of CK934330 vs. ExPASy Swiss-Prot
Match: RS12_DROME (40S ribosomal protein S12 OS=Drosophila melanogaster GN=RpS12 PE=2 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34 Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 2 Query: 149 LGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKSH 520 L AMD+ TALQ VL+KSL GL G+H+ K ++K A LC+LAE ++P+Y KLV ALC +H + L+ V S K LGEW+GLCKID EGK RKV GCS VV+KDFGEE+ L+VV+ H++ + Sbjct: 15 LDGAMDINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLRQN 138
BLAST of CK934330 vs. ExPASy Swiss-Prot
Match: RS12_DICDI (40S ribosomal protein S12 OS=Dictyostelium discoideum GN=rps12 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 63/116 (54.31%), Postives = 87/116 (75.00%), Query Frame = 2 Query: 164 DLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHI 511 D M ALQ V+++SLA G+ARGLHE K ++K A+LCVLA +C++P++V+LVKAL +HN+ L+ VP K LGEWAGLCK+D + ARKVV CS +V+K FG+ESD + ++I Sbjct: 18 DPMVALQKVIKESLAVQGVARGLHETVKALDKRTARLCVLASNCDEPNFVRLVKALATEHNIPLIEVPDNKALGEWAGLCKLDKDLAARKVVACSTLVIKTFGKESDDYKFLMEYI 133
BLAST of CK934330 vs. ExPASy Swiss-Prot
Match: RS12A_SCHPO (40S ribosomal protein S12-A OS=Schizosaccharomyces pombe GN=rps12a PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.621e-29 Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 2 Query: 155 EAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGL 490 E + + AL+ VL+++L H GLARG+ E +K +++ A LCVL E C+Q YVKLV+ALCA+ L+ V K LGEWAGLC +D +G ARKVVGCSCV V D+GE+S L Sbjct: 25 ETVSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAAL 136
BLAST of CK934330 vs. ExPASy Swiss-Prot
Match: RS12_ERYGR (40S ribosomal protein S12 OS=Erysiphe graminis subsp. hordei GN=RPS12 PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 4.718e-29 Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = 2 Query: 161 MDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEES 481 M ++ AL+ LR +L H GLARGL E +K +++ A +CVL E C + Y KL+ ALC++H + L+ VP K LGEWAGLC +D EG ARKVV CSCVVVK++GEES Sbjct: 12 MTVLDALKGALRTALMHDGLARGLREASKALDRREAHMCVLNEACEEEAYKKLIVALCSEHKIPLIKVPDGKQLGEWAGLCVLDREGNARKVVNCSCVVVKNWGEES 118
BLAST of CK934330 vs. ExPASy Swiss-Prot
Match: RS12B_SCHPO (40S ribosomal protein S12-B OS=Schizosaccharomyces pombe GN=rps12b PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.793e-28 Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 2 Query: 176 ALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVV 499 +L+ VL+++L H GLARG+ E +K +++ A LCVL E C+Q YVKLV+ALCA+ L+ V K LGEWAGLC +D +G ARKVVGCSCV V D+GE+S L + Sbjct: 35 SLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142
BLAST of CK934330 vs. ExPASy Swiss-Prot
Match: RS12_CAEEL (40S ribosomal protein S12 OS=Caenorhabditis elegans GN=rps-12 PE=2 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 3.058e-28 Identity = 60/119 (50.42%), Postives = 79/119 (66.39%), Query Frame = 2 Query: 161 MDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 517 MD AL+ VLR + GLA+GLHE K ++K A CVLAE+C++P YVKLV+ LCA+H + L+ V K +GE+ GLCK D EGKARKVVGCS VV ++G E G ++ + S Sbjct: 20 MDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDYFAS 138
BLAST of CK934330 vs. ExPASy Swiss-Prot
Match: RS12_YEAST (40S ribosomal protein S12 OS=Saccharomyces cerevisiae GN=RPS12 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23 Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 2 Query: 176 ALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCAD--HNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQH 508 AL+VVLR +L H GLARGL E K + + A L VL + + +KLV+ L D + V L+ V AK LGEWAGL KID EG ARKVVG S VVVK++G E+D L+++ +H Sbjct: 27 ALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWAGLGKIDREGNARKVVGASVVVVKNWGAETDELSMIMEH 139
BLAST of CK934330 vs. ExPASy Swiss-Prot
Match: RS12_PLAF7 (40S ribosomal protein S12 OS=Plasmodium falciparum (isolate 3D7) GN=RPS12 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.625e-21 Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 2 Query: 164 DLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPS-AKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEES 481 D +TA+Q V++ + H GL G+ E K IE A++C L++ C++P Y KL+ LCA+ N+ L V + +K LG WAGL K+D+EG ARK++G S V V DFGE+S Sbjct: 20 DNVTAIQKVIKNAHVHDGLKIGIREVIKSIESQEAKVCFLSDVCSEPAYKKLITTLCAEKNIPLFMVQNDSKDLGHWAGLFKLDNEGNARKIIGASSVAVVDFGEDS 126 The following BLAST results are available for this feature:
BLAST of CK934330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934330 ID=CK934330; Name=CK934330; organism=Citrus sinensis; type=EST; length=766bpback to top |