CK934330

Overview
NameCK934330
Unique NameCK934330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK934330 vs. ExPASy Swiss-Prot
Match: RS12_TRYBB (40S ribosomal protein S12 OS=Trypanosoma brucei brucei GN=RPS12 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.521e-19
Identity = 44/116 (37.93%), Postives = 72/116 (62.07%), Query Frame = 2 
Query:  167 LMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 514
            L  AL++VL K+    GL  GL E  + +++  A LCVLA+DC   +Y KLV AL   +N+ L+++   + L +WAGL ++ ++G  RK + CSC+ V+DFGE +  L+ +   ++
Sbjct:   29 LEDALRIVLMKARETNGLICGLSEVTRALDRRTAHLCVLADDCEDEEYKKLVTALAKQNNIDLVSMDEREKLAQWAGLTRMAADGSVRKTLKCSCLAVRDFGERTKALDYLLSQLQ 144
The following BLAST results are available for this feature:
BLAST of CK934330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS12_TRYBB1.521e-1937.9340S ribosomal protein S12 OS=Trypanosoma brucei br... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_D01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934330 ID=CK934330; Name=CK934330; organism=Citrus sinensis; type=EST; length=766bp
GGGGATTTGGAAAACCAGCAGTCGCCAGTCGCAGGCCAACGTCCGCTCTC
CGCTAAGGGAAAAAAGGGTAAATATTTGAACAAACAACAAGAAGACAATG
TCTGGTGATGAGGCTGCCCCTGCTGTTGAGACAGCACCTGCTGCCCCCCT
TGGTGAGGCAATGGATCTGATGACGGCTTTGCAGGTTGTGTTGAGAAAAT
CACTTGCTCACGGTGGTCTTGCTCGTGGCCTTCATGAAGGTGCCAAAGTG
ATTGAAAAGCATGCTGCCCAGCTCTGTGTATTGGCTGAAGATTGTAACCA
ACCTGACTATGTGAAATTGGTCAAGGCACTCTGTGCTGACCATAACGTAA
GCTTGTTGACGGTTCCCAGTGCCAAGACCCTCGGCGAGTGGGCTGGTTTG
TGCAAGATTGACTCAGAGGGAAAGGCCAGGAAGGTTGTGGGTTGTTCCTG
TGTTGTTGTGAAGGATTTCGGAGAGGAAAGCGATGGTCTTAACGTTGTTC
AGCAGCACATCAAGTCTCACTGAGTAGCAGTGATGGATTCGTAGTTCAAC
TTTTGTATTTATAGAGAGAGCCTTGTCTTTTTTTTGTCAAATTGTGTTTG
GTTGTCTCACTCCAAGGAGATTTTGTGTTCGTTAGTTGCTATTACTTTTA
GTACTTTTGTTCCTCAATCCTTTATTGCAACTGAAAACATCAATCCTTTT
CTATATTTTTGCTGGATTGAATCTTTTTCAAAAAAAAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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