CK934336

Overview
NameCK934336
Unique NameCK934336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934336_ssr78 microsatellite CK934336_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3493 contig Csv1_Contig3493:87..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO2_DANRE (Small ubiquitin-related modifier 2 OS=Danio rerio GN=sumo2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLTMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SMO2B_XENLA (Small ubiquitin-related modifier 2-B OS=Xenopus laevis GN=sumo2-B PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGGA 365
            D KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG+
Sbjct:    3 DDKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO3_DANRE (Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.647e-17
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  123 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGGA 365
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 93          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SMO3L_DANRE (Small ubiquitin-related modifier 3-like OS=Danio rerio GN=sumo3l PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.647e-17
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  123 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGGA 365
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 93          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO1_XENTR (Small ubiquitin-related modifier 1 OS=Xenopus tropicalis GN=sumo1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  105 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            DKK  +   +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL M + D I+    QTGG
Sbjct:   15 DKK--EGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SMO1B_XENLA (Small ubiquitin-related modifier 1-B OS=Xenopus laevis GN=sumo1-B PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  105 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            DKK  +   +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL M + D I+    QTGG
Sbjct:   15 DKK--EGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO_CAEEL (Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.056e-16
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  120 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            D + +I +KV GQD NEV FR+K  T + KL  +Y DR  V +NS+ FLFDGRR+  + TP  LEM D D I+    Q GG
Sbjct:   10 DNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO4_PIG (Small ubiquitin-related modifier 4 OS=Sus scrofa GN=SUMO4 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            D+KP      + + HINLKV GQDG+   F+I+R T L KLM AYC+RQ + +  I F  DG+ +    TP +LE+ D D ID +  QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVAQFKIRRHTPLSKLMKAYCERQGLSIRQIRFRVDGQPINETHTPAQLELEDEDTIDVLQQQTGG 93          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO1_SPETR (Small ubiquitin-related modifier 1 OS=Spermophilus tridecemlineatus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  102 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL M + D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO1_RAT (Small ubiquitin-related modifier 1 OS=Rattus norvegicus GN=Sumo1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  102 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL M + D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
The following BLAST results are available for this feature:
BLAST of CK934336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO2_DANRE1.261e-1750.55Small ubiquitin-related modifier 2 OS=Danio rerio ... [more]
SMO2B_XENLA1.261e-1750.00Small ubiquitin-related modifier 2-B OS=Xenopus la... [more]
SUMO3_DANRE1.647e-1753.09Small ubiquitin-related modifier 3 OS=Danio rerio ... [more]
SMO3L_DANRE1.647e-1753.09Small ubiquitin-related modifier 3-like OS=Danio r... [more]
SUMO1_XENTR3.106e-1648.84Small ubiquitin-related modifier 1 OS=Xenopus trop... [more]
SMO1B_XENLA3.106e-1648.84Small ubiquitin-related modifier 1-B OS=Xenopus la... [more]
SUMO_CAEEL4.056e-1649.38Small ubiquitin-related modifier OS=Caenorhabditis... [more]
SUMO4_PIG5.298e-1646.15Small ubiquitin-related modifier 4 OS=Sus scrofa G... [more]
SUMO1_SPETR5.298e-1645.98Small ubiquitin-related modifier 1 OS=Spermophilus... [more]
SUMO1_RAT5.298e-1645.98Small ubiquitin-related modifier 1 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934336 ID=CK934336; Name=CK934336; organism=Citrus sinensis; type=EST; length=549bp
GGGGCTAACCAGAGGCGCAGAAACAAAGAGAGGGTAAAATTCAATTCTAA
GAACCTGTGAGGATGTCAGCGACCGGTGGCGGCGGCGGCGGTGGTCAGGA
GGAGGACAAGAAGCCCGTCGATCAGTCGGCGCACATTAACCTCAAAGTCA
AGGGCCAGGATGGCAATGAGGTGTTTTTTAGAATTAAGCGAAGCACCCAG
TTGAAAAAACTCATGAATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAA
CTCTATTGCTTTCTTGTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTC
CAGATGAGCTTGAGATGGGGGATGGAGATGAAATTGATGCAATGCTGCAT
CAGACTGGAGGTGCGCTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTTG
AGCATCGCTGGCGGACTTGATGTTTGAGTTTTTTAAATTAGCCTATATCT
ATGGAAATATTACTGTAAATGATGACTTGGATCTTATAATTAACTTGAAT
TTAAGTCATGGTTTATTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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