CK934342

Overview
NameCK934342
Unique NameCK934342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934342_ssr33 microsatellite CK934342_ssr33:33..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9537 contig Csv1_Contig9537:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.468e-35
Identity = 77/117 (65.81%), Postives = 91/117 (77.78%), Query Frame = 3
Query:  525 ELEMERACSRGISDDE--DGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSP 869
            E E+ER+ S G+ DD+  DG   RKKLRLSKDQ+A+LEE FK H+TLNP          GLRPRQVEVWFQNRRARTKLKQTEVDCE+LKR CE L +EN+RL+KE+ +LRALK +P
Sbjct:   92 ERELERSGS-GVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAP 207          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.468e-35
Identity = 77/117 (65.81%), Postives = 91/117 (77.78%), Query Frame = 3
Query:  525 ELEMERACSRGISDDE--DGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSP 869
            E E+ER+ S G+ DD+  DG   RKKLRLSKDQ+A+LEE FK H+TLNP          GLRPRQVEVWFQNRRARTKLKQTEVDCE+LKR CE L +EN+RL+KE+ +LRALK +P
Sbjct:   92 ERELERSGS-GVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAP 207          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSI (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. indica GN=HOX7 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.269e-35
Identity = 98/242 (40.50%), Postives = 123/242 (50.83%), Query Frame = 3
Query:  186 TAMAEKDDLGLSLSLSFPQNHHS--------LQLNLMPSSACSTSPSGFSLQKTPWNEALFPPSDPNSESCRAETRSFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXXGKRSEREPNGDELEMERACSRGISDDED--GDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-ALKLSPQFY 878
            T M +++DL L L +   +                 M      T P G    + P     FP    ++E+  A +    RG DVN  P+    E                G+ S      +    ++   +  +DDED  G  +RKKLRLSK+QS+ LE+SFKEH+TL P           LRPRQVEVWFQNRRARTKLKQTEVDCE LKRCCE LT ENRRLQ+EV ELR AL+ +   Y
Sbjct:   27 TCMGDEEDLELVLGVRATRRDEQDDQTTCTQSSEEAMEGEEDETRPHG----EAPVESLSFPLFVSSAETGSANSEMCTRGFDVNTRPADGGAEA---------------GRPSSPSSMQEASTRQQVADQEAADDEDNGGGGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGALRTTTSSY 249          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSJ (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. japonica GN=HOX7 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.577e-35
Identity = 95/232 (40.95%), Postives = 118/232 (50.86%), Query Frame = 3
Query:  186 TAMAEKDDLGLSLSLSFPQNHHS--------LQLNLMPSSACSTSPSGFSLQKTPWNEALFPPSDPNSESCRAETRSFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXXGKRSEREPNGDELEMERACSRGISDDED--GDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR 851
            T M +++DL L L +   +                 M      T P G    + P     FP    ++E+  A +    RG DVN  P+    E                G+ S      +    ++   +  +DDED  G  +RKKLRLSK+QS+ LE+SFKEH+TL P           LRPRQVEVWFQNRRARTKLKQTEVDCE LKRCCE LT ENRRLQ+EV ELR
Sbjct:   27 TCMGDEEDLELVLGVRATRRDEQDDQTTCTQSSEEAMEGEEDETRPHG----EAPVESLSFPLFVSSAETGSANSEMCTRGFDVNTRPADGGAEA---------------GRPSSPSSMQEASTRQQVADQEAADDEDNGGGGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELR 239          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.163e-32
Identity = 74/126 (58.73%), Postives = 87/126 (69.05%), Query Frame = 3
Query:  492 GKRSEREPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSP 869
            GKR     +GDE++ +  C  G      G  +RKKLRLSKDQ+A+LEE FK H+TL P           LRPRQVEVWFQNRRARTKLKQTEVDCE LKR C+ L ++NRRL KE+ ELRALK +P
Sbjct:   68 GKRGSGSGSGDEVD-DAGCDVG------GGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATP 186          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.163e-32
Identity = 74/126 (58.73%), Postives = 87/126 (69.05%), Query Frame = 3
Query:  492 GKRSEREPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSP 869
            GKR     +GDE++ +  C  G      G  +RKKLRLSKDQ+A+LEE FK H+TL P           LRPRQVEVWFQNRRARTKLKQTEVDCE LKR C+ L ++NRRL KE+ ELRALK +P
Sbjct:   68 GKRGSGSGSGDEVD-DAGCDVG------GGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATP 186          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.572e-29
Identity = 71/126 (56.35%), Postives = 87/126 (69.05%), Query Frame = 3
Query:  492 GKRSEREPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSP 869
            G   E  P G   E E    RG+     G    KKLRLSK+QS +LEESF+ ++TL P           LRPRQVEVWFQNRRARTKLKQTE++CE+LKRC  +LTEENRRLQ+EV+ELRA++++P
Sbjct:   51 GGEEEEFPMGSVEEDEE--ERGVG----GPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAP 170          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.572e-29
Identity = 71/126 (56.35%), Postives = 87/126 (69.05%), Query Frame = 3
Query:  492 GKRSEREPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSP 869
            G   E  P G   E E    RG+     G    KKLRLSK+QS +LEESF+ ++TL P           LRPRQVEVWFQNRRARTKLKQTE++CE+LKRC  +LTEENRRLQ+EV+ELRA++++P
Sbjct:   51 GGEEEEFPMGSVEEDEE--ERGVG----GPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAP 170          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.964e-28
Identity = 73/173 (42.20%), Postives = 98/173 (56.65%), Query Frame = 3
Query:  351 SDPNSESCRAETRSFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXXGKRSEREPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSP 869
            S P S+      R  LR +D+NRLPS  D ++E                                     S D+     RKKLRL+++QS +LE+SF++++TLNP           LRPRQ+EVWFQNRRAR+KLKQTE++CE+LKR   +LTEEN RL +EV+ELRA+K+ P
Sbjct:   95 SSPLSDEGSGGGRDQLR-LDMNRLPSSEDGDDEE-----------------------------------FSHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGP 231          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.871e-28
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 3
Query:  555 GISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRAL 857
            G S    G  +RKKL+L+K+QS +LE+SF+ HN L+            L+PRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE+LTEEN++L+ E+ ELR L
Sbjct:  103 GGSGSGGGGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRL 203          
The following BLAST results are available for this feature:
BLAST of CK934342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HOX2_ORYSJ1.468e-3565.81Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI1.468e-3565.81Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX7_ORYSI3.269e-3540.50Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HOX7_ORYSJ5.577e-3540.95Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HOX28_ORYSJ1.163e-3258.73Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX28_ORYSI1.163e-3258.73Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX3_ORYSJ1.572e-2956.35Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX3_ORYSI1.572e-2956.35Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
ATB17_ARATH2.964e-2842.20Homeobox-leucine zipper protein ATHB-17 OS=Arabido... [more]
HOX18_ORYSI3.871e-2861.39Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934342 ID=CK934342; Name=CK934342; organism=Citrus sinensis; type=EST; length=890bp
GGGGATTGATTAGCTATCGACTCTTCCTCTTCCTCTCTCTCTCTCTCTCT
CTCTCTCTCCGGAGGCACAGAATTTCTCTTGTTACTCGAATAAAGAGCCG
TTTGAGCAAGAACAAGAACACTTCAAATACTATACAAATACGTCAAATAA
TTTAAAGCTAGAGCTGTTTGAGCAAGAACAAGAAAACAGCCATGGCTGAG
AAAGATGATCTGGGTTTGAGTCTTAGCTTGAGCTTTCCTCAAAATCACCA
TTCTTTACAGCTAAATCTCATGCCTTCTTCTGCTTGTTCCACTTCTCCTT
CTGGTTTCAGTCTCCAAAAAACCCCTTGGAACGAGGCCTTATTCCCACCT
TCAGATCCAAACTCTGAGTCTTGTCGCGCCGAGACCCGATCATTTCTTAG
AGGAATCGACGTGAATCGATTGCCGTCACATGCAGATAACGAAGAAGAAG
TGGGCGTCTCATCTCCTAACAGCACGATTTCGAGCGTTAGCGGCAAGAGA
AGCGAGCGGGAACCTAATGGAGATGAGCTCGAAATGGAGAGAGCTTGCTC
CCGTGGTATCAGCGACGATGAAGATGGTGACACTTCAAGAAAGAAGCTGA
GACTTTCTAAAGATCAGTCAGCCATTCTTGAAGAGAGCTTCAAAGAGCAC
AACACTCTCAACCCAAAGCAAAAGTTGGCGTTGGCAAAGCAGCTTGGTCT
CAGACCTAGACAGGTGGAAGTGTGGTTCCAGAACAGAAGGGCAAGGACCA
AATTGAAGCAAACTGAGGTTGACTGCGAATTCTTGAAGAGATGCTGTGAG
AATCTGACGGAGGAGAACAGGCGGTTGCAGAAAGAAGTTCAGGAGCTGAG
AGCACTGAAGCTTTCCCCGCAGTTCTACATGCAAATGACC
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