CK934342

Overview
NameCK934342
Unique NameCK934342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934342_ssr33 microsatellite CK934342_ssr33:33..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9537 contig Csv1_Contig9537:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSI (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. indica GN=HOX21 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 3
Query:  567 DEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 854
            D+      KK RL+ +Q   LE++F+  N L P          GL+PRQV +WFQNRRAR K KQ E D + LKR  + +  EN  L    ++L+A
Sbjct:  116 DDGSQAGEKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQA 211          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = 3
Query:  564 DDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTE-------ENRRLQKEVQEL 848
            D  D     KK RL+ +Q  +LE+SF+  N L P          GL+PRQV VWFQNRRAR K KQ E D + LK   + L         +N +L+ EV  L
Sbjct:   59 DFYDDQLPEKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSL 160          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 47/122 (38.52%), Postives = 60/122 (49.18%), Query Frame = 3
Query:  510 EPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQK-------EVQELRA 854
            E  GD  E   AC  G           KK RLS +Q   LE SF+  N L P          GL+PRQV VWFQNRRAR K KQ E D   L+   ++L  ++  L++       E++EL+A
Sbjct:   33 EAEGDVEEEMMACGGG---------GEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKA 145          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 47/122 (38.52%), Postives = 60/122 (49.18%), Query Frame = 3
Query:  510 EPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQK-------EVQELRA 854
            E  GD  E   AC  G           KK RLS +Q   LE SF+  N L P          GL+PRQV VWFQNRRAR K KQ E D   L+   ++L  ++  L++       E++EL+A
Sbjct:   33 EAEGDVEEEMMACGGG---------GEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKA 145          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 43/112 (38.39%), Postives = 56/112 (50.00%), Query Frame = 3
Query:  519 GDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 854
            G E EM+      +     G    KK RLS +Q   LE SF+  N L P          GL+PRQV VWFQNRRAR K KQ E D   L++  + L  ++  L+++   L A
Sbjct:   19 GVEEEMDVDEDMAMCGGRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLA 130          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 43/112 (38.39%), Postives = 56/112 (50.00%), Query Frame = 3
Query:  519 GDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 854
            G E EM+      +     G    KK RLS +Q   LE SF+  N L P          GL+PRQV VWFQNRRAR K KQ E D   L++  + L  ++  L+++   L A
Sbjct:   19 GVEEEMDVDEDMAMCGGRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLA 130          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSJ (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. japonica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 43/104 (41.35%), Postives = 52/104 (50.00%), Query Frame = 3
Query:  564 DDEDG-------DTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 854
            D+EDG           KK RLS +Q   LE SF+  N L P          GL+PRQV +WFQNRRAR K KQ E D + L+R  +    EN  L     +L A
Sbjct:   88 DEEDGCGGGGGGGGGEKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHA 191          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSI (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 43/104 (41.35%), Postives = 52/104 (50.00%), Query Frame = 3
Query:  564 DDEDG-------DTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 854
            D+EDG           KK RLS +Q   LE SF+  N L P          GL+PRQV +WFQNRRAR K KQ E D + L+R  +    EN  L     +L A
Sbjct:   88 DEEDGCGGGGGGGGGEKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHA 191          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: ATB54_ARATH (Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana GN=ATHB-54 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 3
Query:  591 KKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTE-------ENRRLQKEVQELRAL 857
            KK +L+  Q  +LEESF+E   L P          GL+P QV VWFQNRRAR K KQ E DC+ LK     L         +N+ L+ +VQ L  L
Sbjct:   68 KKRKLTPIQLRLLEESFEEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYKTKQLEHDCDSLKASYAKLKTDWDILFVQNQTLKSKVQFLNRL 163          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: ATB51_ARATH (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 3
Query:  591 KKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRAL 857
            KK RL+  Q A LE SF+E   L+           GL+PRQ+ VWFQNRRAR K KQ E   + L++  + ++ E + L  EV++LRAL
Sbjct:   78 KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHDEVKKLRAL 166          
The following BLAST results are available for this feature:
BLAST of CK934342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HOX21_ORYSI1.478e-1140.63Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
HAT5_ARATH1.930e-1141.18Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
HOX4_ORYSJ2.521e-1138.52Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX4_ORYSI2.521e-1138.52Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX20_ORYSJ3.292e-1138.39Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX20_ORYSI3.292e-1138.39Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX23_ORYSJ5.616e-1141.35Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HOX23_ORYSI5.616e-1141.35Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
ATB54_ARATH9.579e-1142.71Homeobox-leucine zipper protein ATHB-54 OS=Arabido... [more]
ATB51_ARATH9.579e-1143.82Putative homeobox-leucine zipper protein ATHB-51 O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934342 ID=CK934342; Name=CK934342; organism=Citrus sinensis; type=EST; length=890bp
GGGGATTGATTAGCTATCGACTCTTCCTCTTCCTCTCTCTCTCTCTCTCT
CTCTCTCTCCGGAGGCACAGAATTTCTCTTGTTACTCGAATAAAGAGCCG
TTTGAGCAAGAACAAGAACACTTCAAATACTATACAAATACGTCAAATAA
TTTAAAGCTAGAGCTGTTTGAGCAAGAACAAGAAAACAGCCATGGCTGAG
AAAGATGATCTGGGTTTGAGTCTTAGCTTGAGCTTTCCTCAAAATCACCA
TTCTTTACAGCTAAATCTCATGCCTTCTTCTGCTTGTTCCACTTCTCCTT
CTGGTTTCAGTCTCCAAAAAACCCCTTGGAACGAGGCCTTATTCCCACCT
TCAGATCCAAACTCTGAGTCTTGTCGCGCCGAGACCCGATCATTTCTTAG
AGGAATCGACGTGAATCGATTGCCGTCACATGCAGATAACGAAGAAGAAG
TGGGCGTCTCATCTCCTAACAGCACGATTTCGAGCGTTAGCGGCAAGAGA
AGCGAGCGGGAACCTAATGGAGATGAGCTCGAAATGGAGAGAGCTTGCTC
CCGTGGTATCAGCGACGATGAAGATGGTGACACTTCAAGAAAGAAGCTGA
GACTTTCTAAAGATCAGTCAGCCATTCTTGAAGAGAGCTTCAAAGAGCAC
AACACTCTCAACCCAAAGCAAAAGTTGGCGTTGGCAAAGCAGCTTGGTCT
CAGACCTAGACAGGTGGAAGTGTGGTTCCAGAACAGAAGGGCAAGGACCA
AATTGAAGCAAACTGAGGTTGACTGCGAATTCTTGAAGAGATGCTGTGAG
AATCTGACGGAGGAGAACAGGCGGTTGCAGAAAGAAGTTCAGGAGCTGAG
AGCACTGAAGCTTTCCCCGCAGTTCTACATGCAAATGACC
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