CK934348

Overview
NameCK934348
Unique NameCK934348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.243e-16
Identity = 63/168 (37.50%), Postives = 85/168 (50.60%), Query Frame = 1
Query:  118 LQRFRECELIHGRWVMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR--------NSELD---------------PEKRLYPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 525
            L+ +RE ELIHGRW M A LG    +  +GI W +AG           G   PFS  +L+  ++L++G++E +R        +  +D                 ++ YPGGKFFDPL LA          D EK   L+LAEIKH+RLAM+A L F  +A   GK PL
Sbjct:   93 LKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  295 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   11 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  295 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  295 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 55/173 (31.79%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  139 ELIHGRWVMLATLGALTVEWL---------TGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 573
            E+I+GR+ ML  +GA+  E+L         T + W   G +      +Y          TL  +E+ ++G+ E +R  +            L  EK         YPGG FF+PLG   D +    L+L E+K+ RLAM+A LG+ +Q +VTG GP  N   H++DP++  +L
Sbjct:  102 EVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVL 269          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 58/173 (33.53%), Postives = 84/173 (48.55%), Query Frame = 1
Query:  139 ELIHGRWVMLATLGALTVEWL---------TGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 573
            E+I+GR+ ML   GA+  E L         T + W   G +      +Y          TL  +E+ ++G+ E +R  +            L  EK L       YPGG  F+PLG   D +    L+L EIK+ RLAM+A LG+ +QA+VTG GP  N   HL+DP++  +L
Sbjct:  100 EVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVL 267          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.769e-16
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  280 SITTLIWIEVLVIGYIEFQRNSELDPEK------RLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 555
            S+  ++  +VL++G +E  R     P +      RLYPGG F DPLGLA DP+    L++ EIK+ RLAM   LGF  QA+VTG+GP+ NW  HL DP
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPF-DPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  295 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  295 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of CK934348 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.052e-15
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  256 YLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 561
            YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPL    DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:    3 YLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSF-DPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110          
The following BLAST results are available for this feature:
BLAST of CK934348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB4B_SOLLC1.243e-1637.50Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB2D_SOLLC2.120e-1652.08Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.120e-1652.08Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.120e-1652.08Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_PEA2.120e-1631.79Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC2.120e-1633.53Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_EUGGR2.769e-1646.94Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2F_SOLLC3.616e-1651.04Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.616e-1651.04Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA1.052e-1545.87Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_B09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934348 ID=CK934348; Name=CK934348; organism=Citrus sinensis; type=EST; length=785bp
GGGGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTAT
TGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGT
ACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCAT
GGACGTTGGGTCATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCT
CACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGAT
CATCATACCTGGGGCAACCACTTCCATTCTCAATAACAACGTTGATATGG
ATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCT
TGACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGG
GCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCAGAGATC
AAGCACGCCCGCCTTGCCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGC
TGTTGTCACCGGAAAAGGCCCTCTCAACAACTGGGCTACCCACTTGAGCG
ATCCTCTTCACACAACCATTCTTGACACCTTCATCTCTTAGATTTCTGGT
GTAGCCTCCAGTACTTGGCAGTTGGCACTATTGTTATTATTATTATTATA
TGCGCCTATCTTGTAAAAAGAATTATAACATTTGACAGCTTAAGGGGAAT
GCTATGGCTTCATATTTTGAAGTCATTTCATCTTTGCAGAAAAAAAAAAA
AAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA
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