CK934352

Overview
NameCK934352
Unique NameCK934352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934352_ssr153 microsatellite CK934352_ssr153:153..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12958 contig Csv1_Contig12958:7..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSI (Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.836e-39
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 149
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B3_WHEAT (Histone H2B.3 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 2.836e-39
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 134
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSJ (Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.836e-39
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 149
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSI (Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.836e-39
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 149
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B3_MAIZE (Histone H2B.3 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 2.836e-39
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPT+TSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSREIQTSVRLVLPGELAKHAVSEGTKAVTK 149
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSJ (Histone H2B.10 OS=Oryza sativa subsp. japonica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.836e-39
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 149
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSI (Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.836e-39
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 149
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_TOBAC (Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 3.704e-39
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIF+VLK VHPDIGISSKAMGIMNSFINDIFEKLA+ESSRLA YNKKPTI+SREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   55 SVETYKIYIFRVLKHVHPDIGISSKAMGIMNSFINDIFEKLARESSRLAGYNKKPTISSREIQTAVRLVLPGELAKHAVSEGTKAVTK 142
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B2_WHEAT (Histone H2B.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.704e-39
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 3 
Query:  180 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:   60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 146
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSJ (Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.838e-39
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 148
The following BLAST results are available for this feature:
BLAST of CK934352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B4_ORYSI2.836e-3993.18Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B3_WHEAT2.836e-3993.18Histone H2B.3 OS=Triticum aestivum PE=1 SV=3[more]
H2B3_ORYSJ2.836e-3993.18Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B3_ORYSI2.836e-3993.18Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B3_MAIZE2.836e-3992.05Histone H2B.3 OS=Zea mays PE=3 SV=3[more]
H2B10_ORYSJ2.836e-3993.18Histone H2B.10 OS=Oryza sativa subsp. japonica GN=... [more]
H2B10_ORYSI2.836e-3993.18Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B_TOBAC3.704e-3993.18Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=... [more]
H2B2_WHEAT3.704e-3994.25Histone H2B.2 OS=Triticum aestivum PE=1 SV=2[more]
H2B9_ORYSJ4.838e-3992.05Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_C03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934352 ID=CK934352; Name=CK934352; organism=Citrus sinensis; type=EST; length=649bp
GCGGGGGAAATCGAAATAACAAAGTAAAAANNNATCAAATGGCAGCGAAA
GCCGAGAAAAAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGC
TGCCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCG
ACAAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTAC
ATATTCAAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAA
GGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGG
CTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACT
TCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGC
CAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACTAGCT
CTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAG
CTTGGGCTCTGCAATTTTTGAGGTCCTGTTTCTTTTATTTTCCTTTTGGT
TGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACC
TAATCGAAGTTCTTTTTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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