CK934358
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 9.263e-15 Identity = 72/239 (30.13%), Postives = 106/239 (44.35%), Query Frame = 3 Query: 126 ILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQ----------DWANPGSMGRQYFLGF---EKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 797 +LGA T R FVV AA+ P K + +LDGSLPGD+GFDPLGL DP KW E+I+GR+AM +G +G+A + + WF+ G A +++ +L ++ LMG+ E +R+ DWA P S + F F + Y GG D + ++ KL E+K+ RLAMLA+L ++ + Sbjct: 27 LLGAHVTARVTTPKR---FVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFL------KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFE 243
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.695e-14 Identity = 74/249 (29.72%), Postives = 111/249 (44.58%), Query Frame = 3 Query: 117 ARQILGARSAQSPTGSSRKGSFVVRAAST-----PPVKQGADR--PLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQD----------WANPGSMGRQYFLGF---EKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 797 ++ +L A A G++ F V AA+ P V+ G + P W LDGSLPGDYGFDPLGL DP KW E+I+GR+AM +G +G+A + + WF+ G A +++ TL ++ LMG+ E +R+ D WA P S + F F + Y GG D + ++ K+ E+K+ RLAMLA+L ++ + Sbjct: 23 SQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEW---------LDGSLPGDYGFDPLGLGKDPAFL------KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----TLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFE 243
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.597e-14 Identity = 47/111 (42.34%), Postives = 62/111 (55.86%), Query Frame = 3 Query: 534 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866 ++ ++ LMG E R A G +G L Y GGS DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 18 IWATQVILMGAVEGYRV---AGDGPLGEAEDL---LYPGGSFDPL----------ASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 112
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.338e-13 Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3 Query: 642 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866 Y GGS DP +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 40 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.338e-13 Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3 Query: 642 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866 Y GGS DP +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.338e-13 Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3 Query: 642 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866 Y GGS DP +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.282e-13 Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3 Query: 642 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866 Y GGS DP +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN Sbjct: 191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.282e-13 Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3 Query: 642 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866 Y GGS DP +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN Sbjct: 191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.931e-12 Identity = 55/158 (34.81%), Postives = 77/158 (48.73%), Query Frame = 3 Query: 423 EILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866 E+L K G+ E WF+ G I G +Y +P ++ ++ LMG E R G +G G + Y G + DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN Sbjct: 1 ELLVKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGPLGE----GLDPLYPGDAFDPL----------GLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138 The following BLAST results are available for this feature:
BLAST of CK934358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934358 ID=CK934358; Name=CK934358; organism=Citrus sinensis; type=EST; length=953bpback to top |