CK934358

Overview
NameCK934358
Unique NameCK934358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length953
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:39..992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.263e-15
Identity = 72/239 (30.13%), Postives = 106/239 (44.35%), Query Frame = 3
Query:  126 ILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQ----------DWANPGSMGRQYFLGF---EKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 797
            +LGA      T   R   FVV AA+  P K          +     +LDGSLPGD+GFDPLGL  DP         KW    E+I+GR+AM   +G      +G+A      + + WF+ G    A   +++     +L   ++ LMG+ E +R+           DWA P S   + F  F   + Y GG                   D + ++  KL E+K+ RLAMLA+L ++ +
Sbjct:   27 LLGAHVTARVTTPKR---FVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFL------KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFE 243          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.695e-14
Identity = 74/249 (29.72%), Postives = 111/249 (44.58%), Query Frame = 3
Query:  117 ARQILGARSAQSPTGSSRKGSFVVRAAST-----PPVKQGADR--PLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGLIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVISPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQD----------WANPGSMGRQYFLGF---EKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 797
            ++ +L A  A    G++    F V AA+      P V+ G +   P W         LDGSLPGDYGFDPLGL  DP         KW    E+I+GR+AM   +G      +G+A      + + WF+ G    A   +++     TL   ++ LMG+ E +R+ D          WA P S   + F  F   + Y GG                   D + ++  K+ E+K+ RLAMLA+L ++ +
Sbjct:   23 SQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEW---------LDGSLPGDYGFDPLGLGKDPAFL------KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----TLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFE 243          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.597e-14
Identity = 47/111 (42.34%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  534 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            ++  ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   18 IWATQVILMGAVEGYRV---AGDGPLGEAEDL---LYPGGSFDPL----------ASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 112          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.338e-13
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  642 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:   40 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.338e-13
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  642 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.338e-13
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  642 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.282e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  642 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.282e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  642 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of CK934358 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.931e-12
Identity = 55/158 (34.81%), Postives = 77/158 (48.73%), Query Frame = 3
Query:  423 EILGKAGLIPQETALAWFQTGV-ISPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 866
            E+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G     G +  Y G + DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:    1 ELLVKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGPLGE----GLDPLYPGDAFDPL----------GLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138          
The following BLAST results are available for this feature:
BLAST of CK934358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB4B_SOLLC9.263e-1530.13Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4A_SOLLC2.695e-1429.72Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB21_RAPSA4.597e-1442.34Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2D_SOLLC1.338e-1350.67Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.338e-1350.67Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.338e-1350.67Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC2.282e-1349.33Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.282e-1349.33Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB22_PINSY1.931e-1234.81Chlorophyll a-b binding protein type 2 member 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934358 ID=CK934358; Name=CK934358; organism=Citrus sinensis; type=EST; length=953bp
GGGGGAAGCACTTTTAATTTATCGTATTGAAGTAGAGAAACAAGAGGAAA
AAAGAAAATTAAAAAATGGCAACCCAAGCTTTGGTTTCATCGTCTCTTAC
ATCTTCAGTGGAGACTGCGAGACAAATTCTTGGAGCAAGATCAGCTCAAT
CCCCAACTGGGTCATCAAGAAAAGGTTCCTTTGTTGTTAGGGCAGCTTCT
ACTCCTCCTGTTAAGCAAGGAGCAGACAGACCGTTGTGGTTTGCATCCAA
ACAAAGCCTTTCATACTTGGATGGCAGCCTCCCCGGAGACTATGGATTCG
ACCCACTTGGTCTCTCAGACCCTGAAGGCACAGGAGGGCTCATTGAGCCA
AAATGGCTGGCCTACGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGG
AGCTGTGGGAGCCATTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTC
CGCAAGAAACTGCCCTGGCCTGGTTCCAAACCGGTGTGATCTCCCCAGCG
GGAACATACAACTACTGGGCAGACCCTTACACACTTTTCGTCCTGGAAAT
GGCACTCATGGGATTTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATC
CAGGATCAATGGGCAGGCAATACTTCCTCGGATTCGAGAAATACTTGGGA
GGATCCGGCGATCCGGCTTACCCTGGAGGACCTCTATTCAACCCTCTGGG
TCTTGGGAAAGATGAGAAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGA
AGAATGGAAGATTGGCAATGTTGGCAATCTTGGGTTACTTTGTTCAAGGT
CTTGTTACAGGAGTTGGGCCTTACCAGAACCTATTGGATCACTTGGCTGA
TCCTGTAAACAACAATGTTTTGACTAGCCTCAAGTTTCACTGAGAGAGAA
ATTTCTGATCATTGCTTGGGATTATATATTCCAAGCCTTNNNATCCCCCA
CTN
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