CK934370

Overview
NameCK934370
Unique NameCK934370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_NASOF (Photosystem II reaction center protein I OS=Nasturtium officinale GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_NANDO (Photosystem II reaction center protein I OS=Nandina domestica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_MORIN (Photosystem II reaction center protein I OS=Morus indica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_MANES (Photosystem II reaction center protein I OS=Manihot esculenta GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_MAIZE (Photosystem II reaction center protein I OS=Zea mays GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_LOTJA (Photosystem II reaction center protein I OS=Lotus japonicus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_LOLPR (Photosystem II reaction center protein I OS=Lolium perenne GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_LOBMA (Photosystem II reaction center protein I OS=Lobularia maritima GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_LIRTU (Photosystem II reaction center protein I OS=Liriodendron tulipifera GN=psbI PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CK934370 vs. ExPASy Swiss-Prot
Match: PSBI_LEMMI (Photosystem II reaction center protein I OS=Lemna minor GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
The following BLAST results are available for this feature:
BLAST of CK934370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
PSBI_NASOF3.179e-13100.00Photosystem II reaction center protein I OS=Nastur... [more]
PSBI_NANDO3.179e-13100.00Photosystem II reaction center protein I OS=Nandin... [more]
PSBI_MORIN3.179e-13100.00Photosystem II reaction center protein I OS=Morus ... [more]
PSBI_MANES3.179e-13100.00Photosystem II reaction center protein I OS=Maniho... [more]
PSBI_MAIZE3.179e-13100.00Photosystem II reaction center protein I OS=Zea ma... [more]
PSBI_LOTJA3.179e-13100.00Photosystem II reaction center protein I OS=Lotus ... [more]
PSBI_LOLPR3.179e-13100.00Photosystem II reaction center protein I OS=Lolium... [more]
PSBI_LOBMA3.179e-13100.00Photosystem II reaction center protein I OS=Lobula... [more]
PSBI_LIRTU3.179e-13100.00Photosystem II reaction center protein I OS=Liriod... [more]
PSBI_LEMMI3.179e-13100.00Photosystem II reaction center protein I OS=Lemna ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934370 ID=CK934370; Name=CK934370; organism=Citrus sinensis; type=EST; length=833bp
GGGAACCAAAATGTAGAATTCTAATTGTGTGAATTTAATTTATGAAAACG
ATTTTCTATTTAGAGAATCAAATTCTAAAAAGAACTTCATTTCTTGATGT
CAAAATTGGATATGTAGTATAAAAATAGAGAATCTATTCTCTTTTTCCTT
TTCCCCAAAAACCTGATTTGGAGATTGTGTAATGCTTACTCTCAAACTCT
TTGTTTACACCGTAGTGATATTCTTTGTTTCGCTCTTCATCTTCGGATTC
CTGTCTAATGATCCAGGGCGTAATCCCGGACGCGAAGAATAAAAAAGGAA
GGAGTTGCTTACTTTATTCGTATAAACGTTCTTAGGATTTTTTGATTCCC
AGTTACTATTAAAAATAAAGTAAAAGTGTTCGCTAAAGTTAAATTTGAAA
AATACCAAGCCATCGCCCGAAACGGAAAGAGAGGGATTCGAACCCTCGGT
ACGAAGAACTCGTACACCGGATCAGCAATCCGACGCTTTAATCCACTCAG
CCATCTCTCCTAATTGAAAATAAAAAAAAAAAAAATGACTATGTTACATT
ACACAAAAAATAATGCTTGAAAAAGCCCGTCTTTACTTGATTTTCTATCT
TTACTTTCTATATTCTCTTCTATATTCTCTAGAAGAGAATATAGAAAGTA
AATTGATTATATAGCTCATAGAAAATATAGCTTATAGAATTTCTTTTTTT
TTATTGTCTTTTGTATTCTATTATATAAATAGATATAACTTTTATCAGCA
ATTCCATTTCTATCATTTTTCGAAAATTAAAATAAAGAAAGTATTCGAAA
GAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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