CK934418

Overview
NameCK934418
Unique NameCK934418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK934418 vs. ExPASy Swiss-Prot
Match: PR1F1_ARATH (PRA1 family protein F1 OS=Arabidopsis thaliana GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.772e-11
Identity = 42/147 (28.57%), Postives = 60/147 (40.82%), Query Frame = 1 
Query:  214 RYGFSQRRPWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLTSALMVGAAIVCAHGAFRVPEDLFLDEQE 654
            R G + RRPW +++D  + + P  LA   +RIR N  YF+ NY                          GAW+FLY  R  D+P+ +F R    R                      +  A++ GA  V +H A R  EDLF  ++E
Sbjct:   30 RSGLATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLR--DEPLTVFDREIDHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEE 174
The following BLAST results are available for this feature:
BLAST of CK934418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PR1F1_ARATH5.772e-1128.57PRA1 family protein F1 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_D03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934418 ID=CK934418; Name=CK934418; organism=Citrus sinensis; type=EST; length=903bp
GGGGCCTCTTCTCCCAAATTATCTCCAGTTCTTTCGCAGCATTGTAATTT
CTCCACGCGCCACCACTAATCACACGCGCCACCAATGGCCACTCCAGCGA
CGCTCCCAATCTCAAACCCTCAGACCAACAACATCACCACCACAACTCAA
TCCCAAGCACCCATCGCCACGCCCGCCTTCCGCGCGTTCCTGTCACGCCT
CTCCTCTTCGATCCGTTATGGCTTCTCTCAAAGGCGCCCCTGGTCCGAAC
TCGTTGACCGAACCGCCATGTCCCGACCCGACTCCTTAGCCGAAGCGTAC
TCTCGGATCCGAAAGAACCTCTCCTACTTCAAGGTCAATTATGTAACTTT
ACTCGGCCTCGTACTCGCATTCTCTCTCCTGTCCCATCCTTTCTCTCTCC
TCGTCCTGCTCTGCCTCCTAGGCGCTTGGATCTTCCTCTACCTCTTCCGC
CCTTCCGATCAACCCGTGGTCCTCTTTGGCCGTACGTTTTCCGATCGCGA
AACGCTCGGCGCTCTTGTCGTTTTGACTATCGTTGTCGTGTTCTTGACCA
GCGTCGGATCCTTGTTGACCTCAGCGTTGATGGTCGGAGCTGCGATCGTG
TGTGCGCATGGTGCGTTTAGGGTTCCTGAGGATCTGTTTTTGGACGAGCA
AGAGCCCATCAATTCCGGATTCCTGTCGTTCCTCGGTGGCGCCGCATCCG
CCGCTGCCCCCTCGGTTGCGGCACATGTCTGAAATGACTCGCTGGATCGT
CAATGATCAAGCGTATGATTAATTCATGATTCTTTTTAGGGAAAGGAATT
AATTTAGGGTTTTTGTTTCCTACTCTTAAATGTAACATTTTGGATCTTTA
TGTTTGATTTGTATGATTTCAATTTTGTTACATGCTACATGTTCAATATT
TTT
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