CK934423

Overview
NameCK934423
Unique NameCK934423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1191 contig Csv1_Contig1191:28..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PIN4_ASPFU (Peptidyl-prolyl cis-trans isomerase pin4 OS=Aspergillus fumigatus GN=pin4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  212 LGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAP----FKSTHGYHIILCEGRK 526
            L   T +  RHILCEK  K  EA +KL++G          A+F  +A EYSE    ++GG LGW  RG +   F++ ++      T+ P     K+  GYHII+ EGRK
Sbjct:   32 LKPATSINVRHILCEKFSKKEEALEKLRNG----------AKFDDVAREYSE-DKARQGGSLGWKVRGSLNADFEKAAYELEPSTTANPKYVEVKTGFGYHIIMVEGRK 129          
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PRSA_GEOKA (Foldase protein prsA OS=Geobacillus kaustophilus GN=prsA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 39/94 (41.49%), Postives = 51/94 (54.26%), Query Frame = 2
Query:  230 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 508
            ++A HIL + +    E   KL  G           +FSK+A EYS+ P S   GGDLGWF  GKM   F+E ++   VG  S P K+ +GYHII
Sbjct:  136 IRASHILVKDEKTAKEVKAKLDKG----------EDFSKLAKEYSQDPGSASNGGDLGWFGPGKMVKEFEEAAYKLKVGEVSDPVKTDYGYHII 219          
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PRSA_OCEIH (Foldase protein prsA OS=Oceanobacillus iheyensis GN=prsA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  224 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYS-ECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 508
            T ++A+HIL E +  + E  +K++DG           +F ++A EYS +  S + GGDLG+F  G M   F+E +F+   G  S P +STHG HII
Sbjct:  138 TEIQAQHILLENEEDVAEVQQKIEDG----------EDFGELAQEYSTDTGSAENGGDLGYFSAGSMVPEFEEAAFSLEAGEISDPVQSTHGTHII 223          
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PRSA_BACHD (Foldase protein prsA OS=Bacillus halodurans GN=prsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = 2
Query:  230 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 529
            V+A HIL E +    E   +L+ G           +F+++A+EYS  PS +   GDLG+F +G M   F+E +FN  +   S P +ST+GYHIIL   RK+
Sbjct:  158 VEASHILVEDEETAEEVLDRLEAG----------DDFAELASEYSVDPSAEANNGDLGFFGKGDMVPEFEEAAFNMEIDEVSEPVESTYGYHIILVTDRKD 248          
The following BLAST results are available for this feature:
BLAST of CK934423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PIN4_ASPFU4.794e-1238.53Peptidyl-prolyl cis-trans isomerase pin4 OS=Asperg... [more]
PRSA_GEOKA8.178e-1241.49Foldase protein prsA OS=Geobacillus kaustophilus G... [more]
PRSA_OCEIH2.379e-1138.54Foldase protein prsA OS=Oceanobacillus iheyensis G... [more]
PRSA_BACHD3.108e-1138.61Foldase protein prsA OS=Bacillus halodurans GN=prs... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934423 ID=CK934423; Name=CK934423; organism=Citrus sinensis; type=EST; length=731bp
GGGGAGAGGTTGGCAGTTGGCTGCTGGTTCTTTTGTGTTTCTGAGTTACT
CTGTTGAACCCTTTCGATCGAAGTCAAATCTTTTTTAAGATTTTTCACCT
ATGGGAAAGGATTCTAAACCAAAGGATGGAGGGAAGGGTAAAGGAAAACA
GGCAGCTGGTGGAGCTGATGATTCAAAGGGTAAAGGAAAAGGCGGGAAGT
CAGCTGATGGCCTCGGCACCTGCACATATGTCAAAGCACGACACATCTTA
TGTGAGAAGCAAGGGAAGATCAATGAGGCATACAAGAAGCTGCAAGATGG
TTGGCTGAGCAATGGGGACAAGGTTCCGCAAGCTGAGTTTTCAAAGATAG
CTGCAGAATACTCAGAATGCCCGTCAGGAAAGAAGGGCGGAGATCTTGGA
TGGTTTCCACGTGGAAAGATGGCTGGCCCATTTCAGGAAGTTTCCTTCAA
TACTCCTGTTGGAGTTACCAGTGCACCTTTCAAATCTACGCATGGATACC
ACATAATCTTGTGTGAAGGGAGGAAGAATTGATCGGAAACAGTATGCCAA
TGAAGGGAATCTCTGAAGGGCGAGCATGGAGATGAAAATAATGTTATTGT
ATAATATGTGAATCTGGCTCATCCATGATGGTTGACATCCGTGACTGATT
GATGCTTTTATGGTTCGAAGTTAAATGTTAAATGAGTACTTTTCTTATAT
GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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