CK934430

Overview
NameCK934430
Unique NameCK934430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_ACIBT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=gatA PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.203e-25
Identity = 78/202 (38.61%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            +   +I++L     Q K +SR+L E YL  I +++P +   + V  + AL +AD AD   K   AG+   L GIP+  KD   TK  + TTAGS  L   + P DA VV K + AG + LGK ++ E++   +S+     S   G   NP+ L   P GSS GSA +VA +LA  + GT+T GSI  P+S   + GLKP  G
Sbjct:    4 LHRLSIRELAEGLSQAKFSSRELTEHYLKRIAKIDPQVKSYVTVTSEQALREADAADAALK---AGNATALTGIPLAHKDIFCTKG-IKTTAGSKMLDNFISPYDATVVEKTKAAGLVTLGKVNMDEFAMGSTSE-----SSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_GEOMG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.170e-25
Identity = 78/200 (39.00%), Postives = 111/200 (55.50%), Query Frame = 3
Query:  177 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + TI +L    K+ +L+S +     L  I  ++P ++  I V P+ AL+ A+ AD  R++ AAG +  L GIP+ LKD   TK  + TT  S  L   V P D   V KL++AGA+I+GK +  E++        SG S   G  +NP+ L   P GSSSGSA ++A   A  +LGT+T GSI  P+S    VGL+P  G
Sbjct:    5 DLTIHELHDRLKRKELSSVEATRAMLARIEAVDPKVNAYITVTPEEALAAAEAAD--RRI-AAGDMAPLTGIPVALKDIFVTKG-IRTTCASKILDNFVPPYDGTAVAKLKEAGAVIVGKLNQDEFA-----MGSSGESSAFGPTRNPWNLECIPGGSSSGSAAAIAARTATATLGTDTGGSIRQPASHCGCVGLRPTYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_THEPX (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.364e-25
Identity = 78/199 (39.20%), Postives = 118/199 (59.30%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            TI +L+   K+ ++++ ++ + YL  I  + P +  ++ +  D AL +A +AD   K+K  G    L GIP+++KDNI+T+  + TT  S  L   + P +A VV KL + G IILGK++L E++   SS   S F       KNP+ LS  P GSS GSA ++A + AA +LG++T GSI  P+S   VVG+KP  GL
Sbjct:    7 TIHELRELLKKREVSALEVTKSYLERIKEVEPKIDALVTITEDFALQKAKEAD--EKIKK-GEDTALTGIPVIIKDNISTEG-IKTTCSSKMLENYIPPYNATVVEKLLEEGVIILGKSNLDEFA-MGSSTENSAFKTT----KNPWDLSRVPGGSSGGSAAAIAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGL 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_THEP3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.364e-25
Identity = 79/199 (39.70%), Postives = 118/199 (59.30%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            TI +L+   K+ ++++ ++ + YL  I  + P +  +I +  D AL +A +AD   K+K  G    L GIP+++KDNI+T+  + TT  S  L   + P +A VV KL + G IILGK++L E++   SS   S F       KNP+ LS  P GSS GSA ++A + AA +LG++T GSI  P+S   VVG+KP  GL
Sbjct:    7 TIHELRELLKKREVSALEVTKSYLERIKEVEPKIDALITITEDFALQRAKEAD--EKIKN-GEDTALTGIPVIIKDNISTEG-IKTTCSSKMLENYIPPYNATVVEKLLEEGVIILGKSNLDEFA-MGSSTENSAFKTT----KNPWDLSRVPGGSSGGSAAAIAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGL 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_GEOSL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter sulfurreducens GN=gatA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.364e-25
Identity = 78/200 (39.00%), Postives = 111/200 (55.50%), Query Frame = 3
Query:  177 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            E T+ +L     + +++S +     L  I   +  ++  I V PD AL+ A+ AD  R++ AAG L  L G+P+ LKD   T+  + TT GS  L   + P D  VV KLR+AGA+I+GK +  E++        SG S   G  KNP+ L+  P GSSSGSA ++A   A  +LGT+T GSI  P+S    VGL+P  G
Sbjct:    5 ELTLHELHDKLAKREVSSVEATRALLARIEATDSRVNAYITVTPDEALAAAEAAD--RRI-AAGGLTPLTGVPVALKDIFVTRG-IRTTCGSKILGNFIPPYDGTVVAKLREAGAVIVGKLNQDEFA-----MGSSGESSAFGATKNPWNLACIPGGSSSGSAAAIAARSATATLGTDTGGSIRQPASHCGCVGLRPTYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_DEHSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain BAV1) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.223e-24
Identity = 79/199 (39.70%), Postives = 112/199 (56.28%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            TI       K +K++S +L + +L  I +L P +   + V P+ ALSQA+ AD   K    G +R L GIP+ LKD + TK  + TT  S  L   V P +A VV KL K GA++LGK ++ E++   S++  + F+ R     NP+     P GSS GSA  VA + A  SLG++T GSI  P+S  SV G KP+ G+
Sbjct:    8 TIAQSHKLLKDHKISSAELTKAHLERIEKLEPEIKAFMTVCPETALSQAEAAD---KAIKQGDIRPLTGIPMALKDVLCTKG-IRTTCSSKMLENFVPPYNAHVVDKLAKEGAVLLGKTNMDEFAMGSSTENSAYFTTR-----NPWNTDKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGYKPSYGM 197          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_COXBU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.223e-24
Identity = 78/202 (38.61%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + TI +L+   +   ++S +L + +L  I  +NP L+  I +  + AL+QA  AD      A G    L GIPI  KD   TKD + T+ GS  L   + P DA VV +L KAGAI++GK ++ E++   SS   S F    G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++   + GLKP  G
Sbjct:    1 MHQKTIAELKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARL---AKGEATSLTGIPIAQKDIFCTKD-IKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFA-MGSSNENSYF----GAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_COXBR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.223e-24
Identity = 78/202 (38.61%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + TI +L+   +   ++S +L + +L  I  +NP L+  I +  + AL+QA  AD      A G    L GIPI  KD   TKD + T+ GS  L   + P DA VV +L KAGAI++GK ++ E++   SS   S F    G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++   + GLKP  G
Sbjct:    1 MHQKTIAELKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARL---AKGEATSLTGIPIAQKDIFCTKD-IKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFA-MGSSNENSYF----GAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_COXBN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain Dugway 5J108-111) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.223e-24
Identity = 78/202 (38.61%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + TI +L+   +   ++S +L + +L  I  +NP L+  I +  + AL+QA  AD      A G    L GIPI  KD   TKD + T+ GS  L   + P DA VV +L KAGAI++GK ++ E++   SS   S F    G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++   + GLKP  G
Sbjct:    1 MHQKTIAELKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARL---AKGEATSLTGIPIAQKDIFCTKD-IKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFA-MGSSNENSYF----GAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_COXB2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain CbuG_Q212) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.223e-24
Identity = 78/202 (38.61%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + TI +L+   +   ++S +L + +L  I  +NP L+  I +  + AL+QA  AD      A G    L GIPI  KD   TKD + T+ GS  L   + P DA VV +L KAGAI++GK ++ E++   SS   S F    G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++   + GLKP  G
Sbjct:    1 MHQKTIAELKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARL---AKGEATSLTGIPIAQKDIFCTKD-IKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFA-MGSSNENSYF----GAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYG 193          
The following BLAST results are available for this feature:
BLAST of CK934430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_ACIBT4.203e-2538.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_GEOMG7.170e-2539.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_THEPX9.364e-2539.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_THEP39.364e-2539.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_GEOSL9.364e-2539.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_DEHSB1.223e-2439.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_COXBU1.223e-2438.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXBR1.223e-2438.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXBN1.223e-2438.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXB21.223e-2438.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934430 ID=CK934430; Name=CK934430; organism=Citrus sinensis; type=EST; length=780bp
GCGGGGATCCATCTCATCCAACTCCGAGCCNNNCAAAGTGACCATCGATG
CATTGCCTAAAAATGGCTACCAGTAGTATCGCAATACTGGCCTTTTCTTT
GTTTTCCCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAAAGTA
ATGCCATTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAG
CTCGCTTTCAAGCAAAACAAGCTCACGTCCCGGCAGCTGGTTGAATTTTA
CCTCGGAGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGG
TGAACCCCGATGCACTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAG
GTTAAGGCAGCAGGCTCACTGCGGGGCTTGCACGGGATTCCTATTCTTCT
TAAGGATAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGT
ATGCTCTGCTCCGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAG
TTGAGGAAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTG
GTCTAACTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGGG
GCCAGGGAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGC
AGTGGCTCAGCAATTTCAGTAGCTACAAACTTGGCTGCCGTGTCACTGGG
AACTGAAACGGATGGTTCCATTCTATGTCCGTCCAGTTCTAACTCAGTAG
TGGGACTCAAACCAGCCCTTGGTCTCACCA
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