CK934430

Overview
NameCK934430
Unique NameCK934430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CLOBL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.185e-19
Identity = 70/202 (34.65%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T  +L+      ++ + ++ + +L  I+ ++  L   + V+ + A+ +A + D   K++    L+ L GIP+ +KDNI  K   NT A S  L     P DA V  K+++   IILGK ++ E++   SS   S F       KNP+ L   P GSS GSA++VA + A +SLGT+T GS+  P+S   VVGLKP  G
Sbjct:    3 LTKLTAHELKDMLSNKEVKAEEITKAFLDRINLVDNKLGAYLYVSEEEAIKKAKEIDV--KIEKNEELKALSGIPVGIKDNINVKGMQNTCA-SKILEGYTSPYDAHVTEKIKQEEGIILGKLNMDEFA-MGSSTENSAFK----LAKNPWDLERVPGGSSGGSAVAVAGSEATLSLGTDTGGSVRQPASFCGVVGLKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSEPF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas fluorescens (strain Pf0-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.547e-19
Identity = 70/202 (34.65%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++       K +S +L +  L  I +L+P L+  I +  + AL QA  AD  R   A G    L G PI  KD   T+  + T+ GS  L     P DA VV KL  AG + LGK ++ E++   +++     S   G  KNP+ L   P GSS GSA +VA  L   +  T+T GSI  P++  ++ GLKP  G
Sbjct:    1 MHQLTLAEIARGLADKKFSSEELTKVLLARITQLDPQLNSFISLTEELALEQAKAADVRR---ANGESGALLGAPIAHKDLFCTQG-IRTSCGSKMLDNFKAPYDATVVSKLAAAGTVTLGKTNMDEFAMGSANE-----SSWYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPAATATDTGGSIRQPAAFTNLTGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_NITMU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=gatA PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.547e-19
Identity = 73/202 (36.14%), Postives = 105/202 (51.98%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNP-DALSQADKADYERKVKAAGSLRG--LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            A++K L       K++S +L   +L     LNP  +  I ++   +L+QA  AD        GS RG  L G+PI  KD   TK  + TT GS  L   + P DA V+ +    GA+ +GK ++ E++   SS   S +    G  KNP+  +A P GSS GSA +VA  +A  + GT+T GSI  P++   + GLKP  GL
Sbjct:    4 ASLKQLSAMLAARKISSVELTSEFLKRSRALNPEYNAFITLDERTSLAQAQAADI-----LIGSGRGQPLTGVPIAQKDIFCTKGWL-TTCGSKMLSNFISPYDAHVIGRFNAVGAVNIGKTNMDEFA-MGSSNETSFY----GPVKNPWDTAAVPGGSSGGSACAVAARMAPAATGTDTGGSIRQPAALCGISGLKPTYGL 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_METAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.547e-19
Identity = 72/192 (37.50%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  198 QLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            Q+  K  + ++ ++   YL  I +    ++G I V+  AL QA K D E      G    L G+PI +KDNI+     N+  GS  L   V P +A V+ KL  AGA+ILGK +L E++   S++     +   G   NP+ L   P GSS GSA  VA   A  +LG++T GS+ CP++   VVGLKP  G
Sbjct:   10 QVKDKIKESSAEEVTAGYLEVIEKSK--INGYITVSDKALEQAKKIDVE------GHEGPLAGVPIAIKDNISVVGLPNS-CGSKILEGYVPPFNAHVIEKLLDAGAVILGKTNLDEFAMGSSTE-----TSYYGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCGVVGLKPTYG 187          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_COREF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Corynebacterium efficiens GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.547e-19
Identity = 70/200 (35.00%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA-LSQADKADYERKVKAAGSL--RGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            T  +L       ++TSR++ + +L  I+ ++  +H  + V  +A L+ AD  D   K   AG      L G+P+ LKD + T D   TTA S  L   + P DA V  KLR+AG  ILGK ++ E++   SS   S +    G  +NP+ L   P GS  GS+ ++A+  A +++GT+T GSI  P++  + VG+KP  G
Sbjct:   18 TAAELAGLIHSREVTSREVTQAHLDRINEVDGEIHAFLHVGEEAALAAADAVD---KALDAGEAPASALAGVPLALKDALVTTDAP-TTAASKILEGYMSPYDATVTRKLREAGIPILGKTNMDEFA-MGSSTENSAY----GATRNPWDLERTPGGSGGGSSAALASGEAPLAIGTDTGGSIRQPAALTNTVGVKPTYG 208          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CLOBJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Kyoto / Type A2) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.547e-19
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T  +L+      ++ + ++   +L  I+ ++  L   + V+ + A+ +A + D   K++    L+ L GIP+ +KDNI  K   NT A S  L     P DA V  K++K   IILGK ++ E++   SS   S F       KNP+ L   P GSS GSA++VA   A +SLGT+T GS+  P+S   +VGLKP  G
Sbjct:    3 LTKLTAHELKDILSNKEVKAEEITRAFLDRINLVDNKLGAYLYVSEEEAIKKAKEIDV--KIEKNEELKALSGIPVGIKDNINVKGMQNTCA-SKILQGYTSPYDAHVTEKIKKEEGIILGKLNMDEFA-MGSSTENSAFK----LAKNPWDLERVPGGSSGGSAVAVAGCEATLSLGTDTGGSVRQPASFCGIVGLKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CLOBH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.547e-19
Identity = 70/202 (34.65%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T  +L+      ++ + ++ + +L  I+ ++  L   + V+ + A+ +A + D   K++    L+ L GIP+ +KDNI  K   NT A S  L     P DA V  K+++   IILGK ++ E++   SS   S F       KNP+ L   P GSS GSA++VA + A +SLGT+T GS+  P+S   VVGLKP  G
Sbjct:    3 LTKLTAHELKDMLSNKEVKAEEITKAFLDRINLVDNKLGAYLYVSEEEAIKKAKEID--GKIEKNEELKALSGIPVGIKDNINVKGMQNTCA-SKILEGYTSPYDAHVTEKIKQEEGIILGKLNMDEFA-MGSSTENSAFK----LAKNPWDLERVPGGSSGGSAVAVAGSEATLSLGTDTGGSVRQPASFCGVVGLKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CLOB1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.547e-19
Identity = 70/202 (34.65%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T  +L+      ++ + ++ + +L  I+ ++  L   + V+ + A+ +A + D   K++    L+ L GIP+ +KDNI  K   NT A S  L     P DA V  K+++   IILGK ++ E++   SS   S F       KNP+ L   P GSS GSA++VA + A +SLGT+T GS+  P+S   VVGLKP  G
Sbjct:    3 LTKLTAHELKDMLSNKEVKAEEITKAFLDRINLVDNKLGAYLYVSEEEAIKKAKEID--GKIEKNEELKALSGIPVGIKDNINVKGMQNTCA-SKILEGYTSPYDAHVTEKIKQEEGIILGKLNMDEFA-MGSSTENSAFK----LAKNPWDLERVPGGSSGGSAVAVAGSEATLSLGTDTGGSVRQPASFCGVVGLKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CHLSY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.547e-19
Identity = 71/201 (35.32%), Postives = 103/201 (51.24%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            +   T+   Q A     +T+ +L E  L  I+   P +   + + PDA   A +A  ER+ +   SL  L GIPI +KD I T D + TTAGS  L     P +A V+ +L  AGA+++GK +  E++   SS   S +        NP+  +  P GSS GSA +VA      +LGT+T GSI  P++   + GLKP  G
Sbjct:    4 LHHLTVTAAQAALAAGDITAVELTEACLARINATEPTIRAFLHLTPDAALAAARAADERRQQGR-SLGPLDGIPIAIKDVICT-DGVPTTAGSRILAGFRPPYNATVIERLVAAGAVLVGKLNCDEFA-MGSSTENSAYQIT----TNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYG 197          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CHLAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.547e-19
Identity = 71/201 (35.32%), Postives = 103/201 (51.24%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            +   T+   Q A     +T+ +L E  L  I+   P +   + + PDA   A +A  ER+ +   SL  L GIPI +KD I T D + TTAGS  L     P +A V+ +L  AGA+++GK +  E++   SS   S +        NP+  +  P GSS GSA +VA      +LGT+T GSI  P++   + GLKP  G
Sbjct:    4 LHHLTVTAAQAALAAGDITAVELTEACLARINATEPTIRAFLHLTPDAALAAARAADERRQQGR-SLGPLDGIPIAIKDVICT-DGVPTTAGSRILAGFRPPYNATVIERLVAAGAVLVGKLNCDEFA-MGSSTENSAYQIT----TNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYG 197          
The following BLAST results are available for this feature:
BLAST of CK934430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CLOBL1.185e-1934.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_PSEPF1.547e-1934.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NITMU1.547e-1936.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_METAC1.547e-1937.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_COREF1.547e-1935.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOBJ1.547e-1934.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOBH1.547e-1934.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOB11.547e-1934.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLSY1.547e-1935.32Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLAA1.547e-1935.32Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934430 ID=CK934430; Name=CK934430; organism=Citrus sinensis; type=EST; length=780bp
GCGGGGATCCATCTCATCCAACTCCGAGCCNNNCAAAGTGACCATCGATG
CATTGCCTAAAAATGGCTACCAGTAGTATCGCAATACTGGCCTTTTCTTT
GTTTTCCCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAAAGTA
ATGCCATTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAG
CTCGCTTTCAAGCAAAACAAGCTCACGTCCCGGCAGCTGGTTGAATTTTA
CCTCGGAGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGG
TGAACCCCGATGCACTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAG
GTTAAGGCAGCAGGCTCACTGCGGGGCTTGCACGGGATTCCTATTCTTCT
TAAGGATAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGT
ATGCTCTGCTCCGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAG
TTGAGGAAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTG
GTCTAACTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGGG
GCCAGGGAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGC
AGTGGCTCAGCAATTTCAGTAGCTACAAACTTGGCTGCCGTGTCACTGGG
AACTGAAACGGATGGTTCCATTCTATGTCCGTCCAGTTCTAACTCAGTAG
TGGGACTCAAACCAGCCCTTGGTCTCACCA
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