CK934430

Overview
NameCK934430
Unique NameCK934430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_COXB1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain CbuK_Q154) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.223e-24
Identity = 78/202 (38.61%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + TI +L+   +   ++S +L + +L  I  +NP L+  I +  + AL+QA  AD      A G    L GIPI  KD   TKD + T+ GS  L   + P DA VV +L KAGAI++GK ++ E++   SS   S F    G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++   + GLKP  G
Sbjct:    1 MHQKTIAELKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARL---AKGEATSLTGIPIAQKDIFCTKD-IKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFA-MGSSNENSYF----GAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_DEHSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain CBDB1) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 79/199 (39.70%), Postives = 111/199 (55.78%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            TI       K  K++S +L + +L  I +L P +   + V P+ ALSQA+ AD   K    G +R L GIP+ LKD + TK  + TT  S  L   V P +A VV KL K GA++LGK ++ E++   S++  + F+ R     NP+     P GSS GSA  VA + A  SLG++T GSI  P+S  SV G KP+ G+
Sbjct:    8 TIAQSHKLLKDRKISSAELTKAHLERIEKLEPEIKAFMTVCPETALSQAEAAD---KAIKQGDIRPLTGIPMALKDVLCTKG-IRTTCSSKMLENFVPPYNAHVVDKLAKEGAVLLGKTNMDEFAMGSSTENSAYFTTR-----NPWNTDKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGYKPSYGM 197          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_MICAN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.086e-24
Identity = 80/199 (40.20%), Postives = 108/199 (54.27%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            +I+ L       + T+ ++   +L  I  L P +   + + PD AL+QA K D   K+    SL  L GIPI LKDN+ TK  + TT  S  L   V P ++ V  KLR  GA+I+GK +L E++   SS   SG+        NP+ LS  P GSS GSA +VA     V+LG++T GSI  P+S   VVGLKP  GL
Sbjct:    3 SIRQLHQQLVNKEKTAVEIATEFLARIQALEPQVKSFLHLTPDLALAQAQKVD--EKIARGESLHLLAGIPIALKDNLCTKG-IPTTCASRILENFVPPYESTVTQKLRDLGAVIVGKTNLDEFA-MGSSTENSGYHVTA----NPWDLSRVPGGSSGGSAAAVAAQECVVALGSDTGGSIRQPASFCGVVGLKPTYGL 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_SYMTH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Symbiobacterium thermophilum GN=gatA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.647e-24
Identity = 78/194 (40.21%), Postives = 106/194 (54.64%), Query Frame = 3
Query:  195 LQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            L   F   +L++ ++ E  L  I ++ P +   I V  D  + +A K D  RK      L  L G+PI +KDNI T   M TT  S  L   V P DA VV +LR AGA+I+GKA++ E++        SG S   G  +NP+ L   P GSSSGSA +VA   A ++LGT+T GSI  P++   +VGLKP  G
Sbjct:    7 LNRLFLAGELSAVEIAESALSRIAQVEPAVGAFITVAADHVIERAKKLDARRKAGDT-ELGPLAGVPIAVKDNICTSG-METTCASRILKGYVSPFDATVVERLRAAGAMIIGKANMDEFA-----MGSSGESSAFGVTRNPWDLERVPGGSSSGSAAAVAAGEAPLALGTDTGGSIRQPAAFTGIVGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_HALHL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.647e-24
Identity = 76/202 (37.62%), Postives = 114/202 (56.44%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++  A    +++SR+L +  L  I + +P L+ +I V  + A + AD AD   +   AG L G   +P++ KD   T D + TT GS  L     P DA VV +L +AGA++LGKA++ E++   SS   S F    G  +NP+ L A P GSS GSA +VA  LA  + GT+T GSI  P++ + + GLKP  G
Sbjct:    1 MHQKTVAEISAALHAGEISSRELTDSLLKRIEQFDPRLNSLITVTAEQARAAADAADARLRAGEAGPLTG---VPLVHKDIFCT-DGVATTCGSRMLEPFRAPYDATVVRRLAEAGAVMLGKANMDEFA-MGSSNETSYF----GPVRNPWDLDAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPAALSGICGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CYAP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7424) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.647e-24
Identity = 78/200 (39.00%), Postives = 112/200 (56.00%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            A+I++L     + + ++ ++    L  I +L PLLH  + +  D AL  A K D   K+ A   +  L GIP+ +KDN+ T+  + TT GS  L   V P ++ V  KL+ +GAI LGK +L E++   SS   SG+        NP+ LS  P GSS GSA +VA+    V+LG++T GSI  P+S   VVGLKP  GL
Sbjct:    2 ASIRELHQQLIKKERSAVEITTEALDRIEKLEPLLHSFLHITADQALESAKKVD--AKIAAKEEIGLLEGIPVGIKDNMCTQG-IPTTCGSKILENFVPPYESTVTQKLKDSGAITLGKTNLDEFA-MGSSTESSGYQVTA----NPWDLSRVPGGSSGGSAAAVASEECVVALGSDTGGSIRQPASYCGVVGLKPTYGL 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_METFK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.069e-24
Identity = 78/199 (39.20%), Postives = 108/199 (54.27%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            ++K L       +++S +L + YL  I +LNP ++  I VNP+ +L+QA  AD      A G    L GIPI  KD    K    TT GS  L   + P DAG++ +   AGA+ LGK ++ E++   SS   S F    G+ +NP+  S  P GSS GSA +VA  L A + GT+T GSI  P+S   + GLKP  GL
Sbjct:    5 SLKQLADMLASKEISSVELTQEYLNRIAQLNPEINAYITVNPELSLAQAQAADQRI---ANGDAGPLTGIPIAQKDIFCAKG-WRTTCGSRMLENFIAPYDAGIIERFNAAGAVNLGKTNMDEFA-MGSSNETSYF----GKVQNPWDRSRVPGGSSGGSAAAVAARLCAAATGTDTGGSIRQPASLCGLSGLKPTYGL 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_GEOBB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.069e-24
Identity = 81/202 (40.10%), Postives = 111/202 (54.95%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            I + TI +L    K  +++S +     L  I  ++  ++  I V P+ AL QA+ AD  R++ AAG +  L GIP+ LKD   TK  + TT GS  L   V P D   V KL++ GA+I+GK +  E++   SS   S F    G  KNP+ LS  P GSS GSA ++A   A  +LGT+T GSI  P+S    VGLKP  G
Sbjct:    3 IFDLTIHELHEKLKAKEVSSVEATRAMLDRIEAVDSQVNAYITVTPEQALVQAEDAD--RRI-AAGEIAPLTGIPVGLKDIFVTKG-IRTTCGSRILENFVPPYDGTAVAKLKEQGAVIVGKLNQDEFA-MGSSNESSYF----GPCKNPWDLSCTPGGSSGGSAAAIAARTATATLGTDTGGSIRQPASHCGCVGLKPTYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_SYNAS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophus aciditrophicus (strain SB) GN=gatA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.035e-23
Identity = 75/201 (37.31%), Postives = 110/201 (54.73%), Query Frame = 3
Query:  177 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPS-GFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + TI +LQ   +Q  +TS  +V    G I  +   +H  I +    AL +A KAD + +    G +  L GIP+ LKD   T+  + TT GS  L   + P DA VVVKLR+AGA+  GK ++ E++   S++    GF+      +NP+ L   P GSS GSA +VA +    +LG++T GSI  P++   VVG+KP  G
Sbjct:    5 QLTIHELQNKIRQGGVTSTAIVNSVFGRIDAVEENVHSYITLMRESALEEAQKADEQIRT---GEINALTGIPVALKDIYCTRG-VRTTCGSLILDNFIPPYDATVVVKLREAGAVFTGKTNMDEFAMGSSTETSYYGFT------RNPWDLERIPGGSSGGSAAAVAADECIAALGSDTGGSIRQPAALCGVVGMKPTYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_DEHE1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides ethenogenes (strain 195) GN=gatA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.352e-23
Identity = 78/199 (39.20%), Postives = 111/199 (55.78%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            TI       K+ KL+S +L   +L  I +L P +   + V P+ AL+QA  AD   K    G +R L GIP+ LKD + TK  + TT  S  L   V P +A VV KL + GA++LGK ++ E++   S++  + F+       NP+  +  P GSS GSA  VA + A  SLG++T GSI  P+S  SV GLKP+ G+
Sbjct:    8 TIAQSHKLLKERKLSSAELTRAHLDRIEKLEPEIKAFMTVCPESALAQAKAADEAIK---QGHIRPLTGIPMALKDVLCTKG-IRTTCSSRMLENFVPPYNAHVVDKLAEEGAVLLGKTNMDEFAMGSSTENSAFFTTH-----NPWNTAKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGLKPSYGM 197          
The following BLAST results are available for this feature:
BLAST of CK934430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_COXB11.223e-2438.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_DEHSC1.597e-2439.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_MICAN2.086e-2440.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_SYMTH4.647e-2440.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_HALHL4.647e-2437.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_CYAP74.647e-2439.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_METFK6.069e-2439.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_GEOBB6.069e-2440.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_SYNAS1.035e-2337.31Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_DEHE11.352e-2339.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934430 ID=CK934430; Name=CK934430; organism=Citrus sinensis; type=EST; length=780bp
GCGGGGATCCATCTCATCCAACTCCGAGCCNNNCAAAGTGACCATCGATG
CATTGCCTAAAAATGGCTACCAGTAGTATCGCAATACTGGCCTTTTCTTT
GTTTTCCCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAAAGTA
ATGCCATTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAG
CTCGCTTTCAAGCAAAACAAGCTCACGTCCCGGCAGCTGGTTGAATTTTA
CCTCGGAGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGG
TGAACCCCGATGCACTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAG
GTTAAGGCAGCAGGCTCACTGCGGGGCTTGCACGGGATTCCTATTCTTCT
TAAGGATAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGT
ATGCTCTGCTCCGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAG
TTGAGGAAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTG
GTCTAACTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGGG
GCCAGGGAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGC
AGTGGCTCAGCAATTTCAGTAGCTACAAACTTGGCTGCCGTGTCACTGGG
AACTGAAACGGATGGTTCCATTCTATGTCCGTCCAGTTCTAACTCAGTAG
TGGGACTCAAACCAGCCCTTGGTCTCACCA
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