CK934430

Overview
NameCK934430
Unique NameCK934430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA2_CLOAB (Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS=Clostridium acetobutylicum GN=gatA2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.352e-23
Identity = 79/203 (38.92%), Postives = 110/203 (54.19%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            I + T++ L+ A     L S  +V+ Y   I R  P ++  I +  D AL +A   D ++K+     +  L GIPI +KDNI T D + TT  S  L   V P DA V+ KL+   AII+GK ++ E++   SS   S F       KNP  ++  P GSS GSA  VA  +A +SLG++T GSI  P++   VVGLKP  GL
Sbjct:    3 ILDMTVEQLRNAILDKHLKSEDIVKAYFDNIKRNEPEINAYITLCEDYALKEAK--DVDKKIANGDKVGRLAGIPIAIKDNICT-DGIKTTCASKMLYDFVPPYDATVIKKLKAEDAIIIGKVNMDEFA-MGSSTENSAFKIT----KNPRDITRVPGGSSGGSAAVVAAKMAPISLGSDTGGSIRQPAAFCGVVGLKPTYGL 197          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_ACAM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acaryochloris marina (strain MBIC 11017) GN=gatA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.766e-23
Identity = 79/201 (39.30%), Postives = 115/201 (57.21%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGL-HGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            A+I+ L       + +++++ E  L  IH+L P LH  + +  D AL+QA + D +    AAG   GL  GIPI +KDN+ TK  + TT GS  L   + P ++ V  KL  AGA+++GK +L E++   SS   S +   G    NP+ +S  P GSS GSA +VA +   VS+G++T GSI  P++   VVGLKP  GL
Sbjct:    2 ASIQALHQELITKERSAQEITEAALETIHQLEPKLHSFLAITADQALAQAKQVDAQL---AAGEEIGLLAGIPIGIKDNMCTKG-IATTCGSKILQNFIPPYESTVTQKLAAAGAVMVGKTNLDEFA-MGSSTENSAYQVTG----NPWDVSRVPGGSSGGSAAAVAADECVVSIGSDTGGSIRQPAALCGVVGLKPTYGL 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_GEOSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter sp. (strain M21) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.012e-23
Identity = 79/202 (39.11%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            I + TI +L    K  +++S +     L  I  ++  ++  I V P+ AL QA  AD  R++ AAG +  L G+P+ LKD   TK  + TT GS  L   V P D   V KL++ GA+I+GK +  E++   SS   S F    G  +NP+ LS  P GSS GSA ++A   A  +LGT+T GSI  P+S    VGLKP  G
Sbjct:    3 IFDLTIHELHEKLKAKEVSSVEATRAMLDRIEAVDSQVNAYITVTPEQALVQAQDAD--RRI-AAGEIAPLTGVPVGLKDIFVTKG-IRTTCGSRILENFVPPYDGTAVAKLKEQGAVIVGKLNQDEFA-MGSSNESSYF----GPCRNPWDLSCTPGGSSGGSAAAIAARTATATLGTDTGGSIRQPASHCGCVGLKPTYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_HAHCH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Hahella chejuensis (strain KCTC 2396) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.934e-23
Identity = 76/198 (38.38%), Postives = 108/198 (54.55%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            TI ++    +  + +SR++ + YL  I RLNP L+  I V  D ALSQA++AD       AG    L+G+P+  KD   T+  + TT GS  L + V P ++ V  K   AGA+ LGK ++ E++   SS   S F    G  +NP+     P GSS GSA +VA  L A + GT+T GSI  P++   + GLKP  G
Sbjct:    5 TISEIISGLRDKQFSSREITQDYLARIKRLNPELNCFITVTEDLALSQAEQADARLN---AGQTSVLNGVPLAHKDVFCTEG-VTTTCGSRMLEKFVPPYESTVTRKFIDAGAVTLGKTNMDEFA-MGSSNENSYF----GPVRNPWDTERAPGGSSGGSAAAVAAGLCAAATGTDTGGSIRQPAAFCGLTGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_GRABC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.934e-23
Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + TI + +   +  + ++R+L + +LG I  LNP L+  I V PD A +QA  AD   +V A+G    L GIP+  KD   ++  + TTAGS  L   V P ++ V  ++ + GA+ILGKA+L E++   S+   S +    G  +NP+    D     P GSS GSA +VA +LA  + GT+T GSI  P+S   + G+KP  G
Sbjct:    4 LTDLTIAEARDGLRAKRFSARELTDAHLGAIEALNPRLNAYITVTPDQARAQAAAAD---RVLASGEAGALTGIPVASKDMFCSEG-IRTTAGSRILENFVPPYESAVTERMLRDGAVILGKANLDEFA-MGSANLTSAY----GPVENPWKRHDDDAVLVPGGSSGGSAAAVAAHLALGATGTDTGGSIRQPASYCGIAGIKPTYG 201          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_AZOSE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azoarcus sp. (strain EbN1) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.934e-23
Identity = 75/199 (37.69%), Postives = 108/199 (54.27%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            A++ +L+ A    K++S +L   +L  I RL+  L+  I V+ D   +A +A   R   AAG    L GIP+  KD   T+  + TT GS  L   V P DA VV  L+ AGA+ LGK ++ E++   SS   S F    G  KNP+  +  P GSS GSA +VA  L  ++ GT+T GS+  P++   V G+KP  G+
Sbjct:    4 ASLTELRAALDARKISSVELATLFLDRIERLDASLNAFITVDRDGALEAARAADARI--AAGDAGPLTGIPLAHKDVFCTEGVL-TTCGSKMLANFVSPYDAHVVSLLKTAGAVSLGKTNMDEFA-MGSSNENSHF----GPAKNPWDTTRIPGGSSGGSAAAVAARLVPIATGTDTGGSVRQPAALTGVTGIKPTYGV 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_THETN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter tengcongensis GN=gatA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.138e-23
Identity = 73/199 (36.68%), Postives = 115/199 (57.79%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            T+ +L+    + +++++++ + YL  I  + P +  ++ +  + AL +A  AD   K    G  + L GIP+++KDNI+T+  + TT  S  L   + P +A VV +L   G +ILGK++L E++   SS   S F       KNP+ LS  P GSS GSA +VA + AA +LG++T GSI  P+S   VVG+KP  GL
Sbjct:    7 TVHELKELLHKREVSAQEVTKSYLERIKEVEPKIDALVTITEEFALERAKVADEMIK---NGEAKDLTGIPVIIKDNISTEG-IRTTCSSKMLENYIPPYNATVVERLLNEGVVILGKSNLDEFA-MGSSTENSAFKTT----KNPWDLSRVPGGSSGGSAAAVAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGL 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PROMM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9313) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 71/196 (36.22%), Postives = 109/196 (55.61%), Query Frame = 3
Query:  186 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            I + +   K  ++++R+L +  L  I  ++P LH  +++  D  ++AD    +  + A  SL  L G+P+ +KDN+ TK  + TT  S  L   V P ++ V  +L +AGA++LGK +L E++   SS   S F    G   NP+ +S  P GSS GSA +VA      +LG++T GSI  P+S   VVGLKP  G
Sbjct:    3 IAEWRQQLKLGEVSARELTDHQLARIAVVDPTLHAFLDITADR-ARADADRIDEALAAGESLPPLAGVPLAIKDNLCTKG-IRTTCSSRMLETFVPPYESTVTERLWQAGAVLLGKTNLDEFA-MGSSTETSAF----GATSNPWDISRVPGGSSGGSAAAVAAGECMAALGSDTGGSIRQPASFCGVVGLKPTYG 191          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PROM3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9303) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 71/196 (36.22%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  186 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            I + +   K  ++++R+L++  L  I  ++P LH  ++V  +  ++AD    +  + A  SL  L G+P+ +KDN+ TK  + TT  S  L   V P ++ V  +L +AGA++LGK +L E++   SS   S F    G   NP+ +S  P GSS GSA +VA      +LG++T GSI  P+S   VVGLKP  G
Sbjct:    3 IAEWRQQLKLGEVSARELIDHQLARIAVVDPTLHAFLDVTAER-ARADADRIDEALAAGESLPPLAGVPLAIKDNLCTKG-IRTTCSSRMLETFVPPYESTVTERLWQAGAVLLGKTNLDEFA-MGSSTETSAF----GATSNPWDISRVPGGSSGGSAAAVAAGECMAALGSDTGGSIRQPASFCGVVGLKPTYG 191          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA1_CLOAB (Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS=Clostridium acetobutylicum GN=gatA1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 71/204 (34.80%), Postives = 117/204 (57.35%), Query Frame = 3
Query:  165 FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + ++   +KD+     + ++   ++   +L  I  ++  ++ ++ V   +A++ A + D  +K+++  SL GL G+P+ +KDNI+ K+  NT A S  L   V P DA V+  L+K   +I+GKA++ E++   SS   S F       KNP+ L   P GSS GSA++VA+  A +SLGTET GS+  P+S   +VGLKP  G
Sbjct:    4 YKLKAHELKDM---ISKKEVKVEEVTNSFLNRIEEVDEKVNALLYVAKEEAVNTAKELD--KKIESGESLSGLSGVPVAIKDNISVKNMQNTCA-SKILEGYVSPYDATVIENLKKNNGVIIGKANMDEFA-MGSSTENSAFK----VSKNPWSLERVPGGSSGGSAVAVASLEAPISLGTETGGSVRQPASFCGLVGLKPTYG 196          
The following BLAST results are available for this feature:
BLAST of CK934430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA2_CLOAB1.352e-2338.92Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS... [more]
GATA_ACAM11.766e-2339.30Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_GEOSM3.012e-2339.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_HAHCH3.934e-2338.38Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_GRABC3.934e-2336.71Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_AZOSE3.934e-2337.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_THETN5.138e-2336.68Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_PROMM6.711e-2336.22Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROM36.711e-2336.22Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA1_CLOAB6.711e-2334.80Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934430 ID=CK934430; Name=CK934430; organism=Citrus sinensis; type=EST; length=780bp
GCGGGGATCCATCTCATCCAACTCCGAGCCNNNCAAAGTGACCATCGATG
CATTGCCTAAAAATGGCTACCAGTAGTATCGCAATACTGGCCTTTTCTTT
GTTTTCCCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAAAGTA
ATGCCATTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAG
CTCGCTTTCAAGCAAAACAAGCTCACGTCCCGGCAGCTGGTTGAATTTTA
CCTCGGAGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGG
TGAACCCCGATGCACTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAG
GTTAAGGCAGCAGGCTCACTGCGGGGCTTGCACGGGATTCCTATTCTTCT
TAAGGATAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGT
ATGCTCTGCTCCGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAG
TTGAGGAAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTG
GTCTAACTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGGG
GCCAGGGAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGC
AGTGGCTCAGCAATTTCAGTAGCTACAAACTTGGCTGCCGTGTCACTGGG
AACTGAAACGGATGGTTCCATTCTATGTCCGTCCAGTTCTAACTCAGTAG
TGGGACTCAAACCAGCCCTTGGTCTCACCA
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