CK934430

Overview
NameCK934430
Unique NameCK934430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_BORGA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Borrelia garinii GN=gatA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.312e-15
Identity = 66/200 (33.00%), Postives = 100/200 (50.00%), Query Frame = 3
Query:  174 REATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            ++  I D+ LA+K N               + LN  ++G IE   D+L  A + D   K      L  L G+PI +KDNI+ +DK + T  S  L   + P DA V+ +L+  GAI++GK ++ E++        +G     G   NP        GSS GSA  VA+  A  SLG++T GS+  P+S + ++G KP+ G
Sbjct:   18 KKCKIYDILLAYKNN---------------YELNKDINGYIEFFDDSLDIAKRYDDCLKNCELEDLP-LIGMPIAVKDNISIQDK-SLTCASEILKGYISPYDATVIKRLKNKGAILIGKTNMDEFA-----MGSTGEFSCYGATLNPLNREYVIGGSSGGSAAVVASFQAPFSLGSDTGGSVRLPASFSGILGFKPSYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_SINMW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sinorhizobium medicae (strain WSM419) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 66/202 (32.67%), Postives = 98/202 (48.51%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYV-----LSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            TI + +      ++T+ +L + YL  I   N  ++  I V PD   +  KA   R    AG    L GIP+ +KD   T+  ++T A S+ L       ++ V   L   GA++LGK ++ E++   SS   S +    G  KNP+      L   P GSS GSA +VA  L A +  T+T GSI  P++    VG+KP  G
Sbjct:    8 TIAEARAKLSDKEITAVELTDAYLAAIEAANETINAYIAVTPDKAREMAKASDARI--GAGKAGALEGIPLGIKDLFGTQG-LHTQACSHILDGFRPHYESTVTQNLWNDGAVMLGKLNMDEFA-MGSSNETSYY----GPVKNPWRAKESNLDLVPGGSSGGSAAAVAARLCAGATATDTGGSIRQPAAFTGTVGIKPTYG 201          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_MYCPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium paratuberculosis GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 67/188 (35.64%), Postives = 97/188 (51.60%), Query Frame = 3
Query:  219 KLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSL--RGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            +L+S ++ +  L +I   +   H  + V  D AL  A   D   +  AAG      L G+P+ LKD   T D M TT GS  L     P DA V  KLR AG  ILGK ++ E++   SS   S +    G  +NP+ +   P GS  GSA ++A   A +++G++T GSI  P++  + VG+KP  G
Sbjct:   20 ELSSVEVTQACLDQIAATDERYHAFLHVAADEALGAAAVVD---EAVAAGERLPSPLAGVPLALKDVFTTVD-MPTTCGSKILQGWRSPYDATVTTKLRAAGIPILGKTNMDEFA-MGSSTENSAY----GPTRNPWNVERVPGGSGGGSAAALAAFQAPLAIGSDTGGSIRQPAALTATVGVKPTYG 198          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_MESSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mesorhizobium sp. (strain BNC1) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 68/206 (33.01%), Postives = 103/206 (50.00%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPR-DAGVVVKLRKAGAIILGKASLSEW----SNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + TI +++      + T+ +L E YL  I   N  L+  I V  D   +  KA   R ++  G  R L G+P+ +KD  AT+  ++T A S+ +L +  PR ++ V   L   GA++LGK ++ E+    SN  S   P     R   G    V    P GSS GSA +VA  L A +  T+T GSI  P++  + VG+KP  G
Sbjct:    4 LTKLTISEIRAKLADKEFTALELTEAYLSAIQTANEKLNAYITVTADKAREMAKASDMRLMQ--GGARPLEGVPLGIKDLFATEG-VHTQACSH-ILDAFKPRYESTVTTNLWADGAVMLGKLNMDEFAMGSSNETSYYGPVVNPWREEGGNKDLV----PGGSSGGSAAAVAAWLCAGATATDTGGSIRQPAAFTATVGIKPTYG 201          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_LACS1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 68/186 (36.56%), Postives = 100/186 (53.76%), Query Frame = 3
Query:  219 KLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            K +  +L +     I +++  +   ++++ + AL +A K D ER VKA   L    GI I +KDNI TKD + TTA S  L       +A V+ KL  AG I +GK ++ E++   SS   S F       KN +  +  P GSS GSA +VA+     SLG++T GSI  P++ N +VG+KP  G
Sbjct:   19 KYSVEELTKSTFDNIKKVDKEIEAFLKLDEERALEKARKID-ERGVKADSIL---DGIGIGIKDNIVTKD-LTTTAASKMLENFEPIYNATVMDKLNDAGMITVGKLNMDEFA-MGSSTENSAFKIT----KNVWDTTKVPGGSSGGSAAAVASGQVLASLGSDTGGSIRQPAAFNGIVGVKPTYG 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_HALMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Haloarcula marismortui GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  378 LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            L G  + +KDNI+T+  + TT GS  L   V P DA VV +L+ AGA I GK ++ E+    +++  S F    G  +NP      P GSS GSA  VA   A ++LG++T GSI CP++   VVG+KP  GL
Sbjct:   21 LAGKTVAVKDNISTEG-VRTTCGSAMLEDYVPPYDATVVERLKDAGATIPGKTNMDEFGMGTTTET-SAF----GAVENPAAEGRVPGGSSGGSAAVVAAGDADLALGSDTGGSIRCPAAFCGVVGIKPTYGL 147          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CLOBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 61/197 (30.96%), Postives = 104/197 (52.79%), Query Frame = 3
Query:  186 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            +KDL     + +++  ++ + +L  +  ++  ++  + +   +AL+ A   D   K+     +  L G P+ +KDNI+ K+  NT A S  L   + P DA V   ++  G +ILGK ++ E++   SS   S +       +NP+ L   P GSS GSA +VA+    ++LGT+T GS+  P+S   +VGLKP  G
Sbjct:   11 LKDL---ISKKEVSVEEVTKAHLENVKNIDAKVNAFLYIAEEEALNDAKALD--EKLSKGEDIGLLGGAPLGIKDNISVKNMQNTCA-SKILEGYISPYDATVSESVKSQGGVILGKLNMDEFA-MGSSTENSAYKIT----RNPWDLDRVPGGSSGGSAAAVASKEVPLALGTDTGGSVRQPASFCGIVGLKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_BRUAB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brucella abortus GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 67/202 (33.17%), Postives = 97/202 (48.02%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            TI + +   K   +T+ +L + YL  I   N  ++  + V  D      KA  ER  K  G    L GIP+ +KD  ATK  ++T A S+ L       ++ V   L   GA++LGK ++ E +   SS   S +    G  KNP+          P GSS GSA +VA +L A +  T+T GSI  P++    VG+KP  G
Sbjct:    8 TIAEARDKLKAKAITATELTDAYLSAIDAANDAINAYVAVTHDQARSMAKASDERIAK--GEAGALEGIPLGVKDLFATKG-VHTQACSHILDGFKPEYESTVTANLWADGAVMLGKLNMDEVA-MGSSNETSYY----GPVKNPWRAKGSNADLVPGGSSGGSAAAVAAHLCAGATATDTGGSIRQPAAFTGTVGIKPTYG 201          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_BRUA2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brucella abortus (strain 2308) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 67/202 (33.17%), Postives = 97/202 (48.02%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            TI + +   K   +T+ +L + YL  I   N  ++  + V  D      KA  ER  K  G    L GIP+ +KD  ATK  ++T A S+ L       ++ V   L   GA++LGK ++ E +   SS   S +    G  KNP+          P GSS GSA +VA +L A +  T+T GSI  P++    VG+KP  G
Sbjct:    8 TIAEARDKLKAKAITATELTDAYLSAIDAANDAINAYVAVTHDQARSMAKASDERIAK--GEAGALEGIPLGVKDLFATKG-VHTQACSHILDGFKPEYESTVTANLWADGAVMLGKLNMDEVA-MGSSNETSYY----GPVKNPWRAKGSNADLVPGGSSGGSAAAVAAHLCAGATATDTGGSIRQPAAFTGTVGIKPTYG 201          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_BRUA1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brucella abortus (strain S19) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 67/202 (33.17%), Postives = 97/202 (48.02%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            TI + +   K   +T+ +L + YL  I   N  ++  + V  D      KA  ER  K  G    L GIP+ +KD  ATK  ++T A S+ L       ++ V   L   GA++LGK ++ E +   SS   S +    G  KNP+          P GSS GSA +VA +L A +  T+T GSI  P++    VG+KP  G
Sbjct:    8 TIAEARDKLKAKAITATELTDAYLSAIDAANDAINAYVAVTHDQARSMAKASDERIAK--GEAGALEGIPLGVKDLFATKG-VHTQACSHILDGFKPEYESTVTANLWADGAVMLGKLNMDEVA-MGSSNETSYY----GPVKNPWRAKGSNADLVPGGSSGGSAAAVAAHLCAGATATDTGGSIRQPAAFTGTVGIKPTYG 201          
The following BLAST results are available for this feature:
BLAST of CK934430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BORGA2.312e-1533.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_SINMW3.019e-1532.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_MYCPA3.019e-1535.64Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MESSB3.019e-1533.01Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LACS13.019e-1536.56Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_HALMA3.019e-1542.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_CLOBA3.019e-1530.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BRUAB3.019e-1533.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BRUA23.019e-1533.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BRUA13.019e-1533.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934430 ID=CK934430; Name=CK934430; organism=Citrus sinensis; type=EST; length=780bp
GCGGGGATCCATCTCATCCAACTCCGAGCCNNNCAAAGTGACCATCGATG
CATTGCCTAAAAATGGCTACCAGTAGTATCGCAATACTGGCCTTTTCTTT
GTTTTCCCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAAAGTA
ATGCCATTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAG
CTCGCTTTCAAGCAAAACAAGCTCACGTCCCGGCAGCTGGTTGAATTTTA
CCTCGGAGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGG
TGAACCCCGATGCACTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAG
GTTAAGGCAGCAGGCTCACTGCGGGGCTTGCACGGGATTCCTATTCTTCT
TAAGGATAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGT
ATGCTCTGCTCCGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAG
TTGAGGAAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTG
GTCTAACTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGGG
GCCAGGGAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGC
AGTGGCTCAGCAATTTCAGTAGCTACAAACTTGGCTGCCGTGTCACTGGG
AACTGAAACGGATGGTTCCATTCTATGTCCGTCCAGTTCTAACTCAGTAG
TGGGACTCAAACCAGCCCTTGGTCTCACCA
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