CK934430

Overview
NameCK934430
Unique NameCK934430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_HELMI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.764e-23
Identity = 74/198 (37.37%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            T  +L     + ++++ ++V+     +  L P +   + +  D AL QA + D   K+ A  ++  L GIP+ +KDN+ T D + TT  S  L   V P DA VV KL++AGA+++GK +L E++   SS   SGF        NP+ +   P GSS GSA SVA   A  SLG++T GSI  P++   VVGLKP  G
Sbjct:    7 TAHELHDLLVRKEVSATEIVKTQADRMQALEPKIRAFVTLTVDKALEQAARVD--AKIAAGEAIGPLEGIPMAIKDNMCT-DGVRTTCSSKILNNFVPPYDATVVTKLKEAGAVMMGKTNLDEFA-MGSSTENSGFFATC----NPWDIERVPGGSSGGSAASVAAGQAVFSLGSDTGGSIRQPAAFCGVVGLKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_ALKMQ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alkaliphilus metalliredigens (strain QYMF) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.764e-23
Identity = 73/203 (35.96%), Postives = 113/203 (55.67%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            I E TI D++  + Q + T + +V+ Y+  I  L+  ++  I +    AL +A  A  + K+     +  L GIP+ +KDN+ T+  + T+  S  L   + P DA +V KLR AGAII+GK ++ E++   SS   S F       KNP+ L+  P GSS GSA ++A   A +++G++T GSI  P++    VGLKP  GL
Sbjct:    3 IEEMTIMDIRKGYVQKQFTVKDVVQGYIDRIKELDGKINAFITLCEESALMEA--AVLDEKLSRGEEIGLLGGIPVAIKDNMCTQG-IKTSCASEMLADFIPPYDATIVKKLRAAGAIIIGKTNMDEFA-MGSSTENSAFKVT----KNPWDLTKVPGGSSGGSAAALAAGFAPLTIGSDTGGSIRQPAAFCGTVGLKPTYGL 197          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CLOPH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 79/203 (38.92%), Postives = 108/203 (53.20%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKV-KAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            I + T  +L    KQ +L+  + V+     I +  P  H  I VN + AL QA K     +  K A S   L G+PI +KDNI  K  M TT  S  L   + P +A V+ +L+ AGAIILGK ++ E++   S+   S F    G  KNP+ +   P GSS GSA +VA   A ++LGT+T GSI  PS+   V G+KP  G
Sbjct:    3 ITKLTAIELSKKIKQKELSVEEAVKATFSAIKKREPYYHSYITVNEEEALEQASKIQIAIEAGKFADS--PLAGVPIAIKDNICVKG-MRTTCASKILEDFIPPYNASVIERLKDAGAIILGKTNMDEFA-MGSTTETSYF----GATKNPWNIECIPGGSSGGSAAAVAAEEAFIALGTDTGGSIRQPSAFCGVTGIKPTYG 197          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSEAE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas aeruginosa GN=gatA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 73/202 (36.14%), Postives = 107/202 (52.97%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++  A    + ++ +L    LG I +L+P L+  I +  D A++QA  AD  R   A G    L G PI  KD   T+  + T+ GS  L   V P DA VV KL  AGA+ LGK ++ E++   S++     S   G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++  ++ G+KP  G
Sbjct:    2 LHQLTLAEIARALADKQFSAEELTRTLLGRIRQLDPQLNSFISITDDLAIAQAKAADERR---ANGENGALLGAPIAHKDLFCTQG-VRTSCGSKMLDNFVSPYDATVVEKLTAAGAVTLGKLNMDEFAMGSSNQ-----SSHYGAVKNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYG 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_BDEBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bdellovibrio bacteriovorus GN=gatA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 66/198 (33.33%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            A++ ++  A     ++++++   +L  I  LNP L+    +NP A+ +A+  D   ++     +  L G+P  +K+   TK  + TTAGS  L   V P DA  V +L+K+G +++GK +  E++   S++     +   G  KNP+ L   P GSS GSA + A+ L A +LGT+T GSI  P+S   +VG+KP  G
Sbjct:    6 ASLSEISEAVNNRSISAKEVTLHFLKRIENLNPKLNAFTSLNPQAVQEAEAVD--ARIANGEDVGLLAGVPFGIKEMFCTKG-LTTTAGSKILENFVPPYDATAVARLKKSGIVVMGKLNQDEFAMGSSNE-----TSFHGVVKNPWDLERVPGGSSGGSAAAQASRLVAGTLGTDTGGSIRQPASFCGIVGVKPTYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_MAGSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Magnetococcus sp. (strain MC-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.952e-22
Identity = 74/202 (36.63%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + E T+++        +++S +L +  L +I + NP ++  + V+ + AL+ A  AD      AAG+   L GIPI  KD   T D M TT  S  L   + P DA +   LR+AGA+ILGK +L E++   SS   S F    G  +NP+     P GSS GS+ ++A N+A  + GT+T GSI  P+S  ++ GLKP  G
Sbjct:    3 LNELTLREAADKLATKEISSVELTQACLDQIAKHNPTINAFVTVDAEKALAAAQAADARI---AAGNGAPLTGIPIAHKDIFNTTD-MRTTCSSRMLENFIPPFDATITTHLRQAGAVILGKTNLDEFA-MGSSTETSYF----GASRNPWDTQRTPGGSSGGSSAAIAANMAICATGTDTGGSIRQPASLTNLTGLKPTYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSEA7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas aeruginosa (strain PA7) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22
Identity = 73/202 (36.14%), Postives = 106/202 (52.48%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++  A    + ++ +L    LG I +L+P L+  I V  D A++QA  AD  R   A G    L G PI  KD   T+  + T+ GS  L   V P DA VV KL  AG + LGK ++ E++   S++     S   G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++  ++ G+KP  G
Sbjct:    2 LHQLTLAEIARALADKRFSAEELTRTLLGRIRQLDPQLNSFISVTDDLAIAQAKAADERR---ANGENGALLGAPIAHKDLFCTQG-VRTSCGSKMLDNFVSPYDATVVEKLAAAGTVTLGKLNMDEFAMGSSNQ-----SSHYGAVKNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYG 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_NITEU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosomonas europaea GN=gatA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22
Identity = 76/200 (38.00%), Postives = 110/200 (55.00%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            A+++ L L   + K++S +L   +L  I  LNP L+  I ++ + +L QA+ AD   K+ AAG    L GIPI  KD    +  + TT GS  L   V P DA VV +  +AG + LGK ++ E++   SS   S +    G  KNP+   A P GSS GSA +VA  LA  + G++T GSI  P++   + G+KP  GL
Sbjct:    4 ASLRQLSLLLSEKKISSTELTSEFLSRIKALNPDLNAFITIDEEKSLDQANVAD---KMIAAGRSTPLTGIPIAQKDIFCARGWL-TTCGSKMLSNFVSPYDATVVERFDQAGMVNLGKTNMDEFA-MGSSNETSYY----GPVKNPWDRLAVPGGSSGGSACAVAARLAPAATGSDTGGSIRQPAALCGISGIKPTYGL 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_SYNSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain CC9605) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22
Identity = 73/202 (36.14%), Postives = 115/202 (56.93%), Query Frame = 3
Query:  174 REATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            R+ TI   +   +  +++SR+LV+ +L  +    P L+  +EV  D A ++A + D   + +AAG   G L G+P+ +KDN+ TK  + TT  S  L + V P ++ V  +L +AG +++GK +L E++   S++  S F    G  +NP+  +  P GSS GSA +VA      SLG++T GSI  P+S   VVGLKP  G
Sbjct:    4 RDMTISAWRQQLQSGEVSSRELVDQHLKRLESSEPSLNAFVEVTADQARAEASRID---EARAAGEALGPLAGLPLAIKDNLCTKG-VRTTCSSRMLEQFVPPYESTVTERLWQAGGVLVGKTNLDEFAMGGSTET-SAF----GATQNPWNTAHVPGGSSGGSAAAVAAGSCVASLGSDTGGSIRQPASFCGVVGLKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CHRVO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chromobacterium violaceum GN=gatA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22
Identity = 75/201 (37.31%), Postives = 110/201 (54.73%), Query Frame = 3
Query:  177 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            +AT+K L       +++S +L   YL  I  LNP L+ ++ V+ +  L++A  AD      AAG  R L G+P++ KD +  +    T+ GS  L   V P  A VV +   AG + LG+A++ E++   SS   S +    G  KNP+ L+A P GSS GSA +VA  LA V+  T+T GSI  P+S   V G+KP  G+
Sbjct:    3 QATLKQLSQQLAAKQVSSVELASQYLDRIEALNPQLNAIVTVDREKTLAEARAADARL---AAGDARALTGVPLVHKD-LFCQQGWKTSCGSRMLDNFVSPYSAHVVEQCAAAGMVTLGRANMDEFA-MGSSNENSFY----GAVKNPWDLNAIPGGSSGGSAAAVAARLAPVATATDTGGSIRQPASHCGVTGIKPTYGV 194          
The following BLAST results are available for this feature:
BLAST of CK934430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_HELMI8.764e-2337.37Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_ALKMQ8.764e-2335.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_CLOPH1.145e-2238.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_PSEAE1.495e-2236.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_BDEBA1.495e-2233.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_MAGSM1.952e-2236.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_PSEA72.550e-2236.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NITEU2.550e-2238.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_SYNSC3.330e-2236.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_CHRVO3.330e-2237.31Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934430 ID=CK934430; Name=CK934430; organism=Citrus sinensis; type=EST; length=780bp
GCGGGGATCCATCTCATCCAACTCCGAGCCNNNCAAAGTGACCATCGATG
CATTGCCTAAAAATGGCTACCAGTAGTATCGCAATACTGGCCTTTTCTTT
GTTTTCCCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAAAGTA
ATGCCATTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAG
CTCGCTTTCAAGCAAAACAAGCTCACGTCCCGGCAGCTGGTTGAATTTTA
CCTCGGAGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGG
TGAACCCCGATGCACTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAG
GTTAAGGCAGCAGGCTCACTGCGGGGCTTGCACGGGATTCCTATTCTTCT
TAAGGATAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGT
ATGCTCTGCTCCGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAG
TTGAGGAAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTG
GTCTAACTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGGG
GCCAGGGAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGC
AGTGGCTCAGCAATTTCAGTAGCTACAAACTTGGCTGCCGTGTCACTGGG
AACTGAAACGGATGGTTCCATTCTATGTCCGTCCAGTTCTAACTCAGTAG
TGGGACTCAAACCAGCCCTTGGTCTCACCA
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