CK934430

Overview
NameCK934430
Unique NameCK934430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CAUSK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Caulobacter sp. (strain K31) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.694e-14
Identity = 66/202 (32.67%), Postives = 99/202 (49.01%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            T+K      ++   TS +L   ++  I     L   ++E    ALS A  +D  R + AA   R L GIP+ +KD   T+  + TTA S  L   V   ++ V  +L + GA++LGK +L E++   SS   S +    G   NP+  +       P GSS GSA +VA +L   +  T+T GSI  P++    VG+KP  G
Sbjct:    8 TLKGALDGLEKGDFTSVELTRAHIDAIEAARGLNAFLLETPEQALSMAAASDARRALDAA---RPLDGIPLGIKDLFCTQG-VRTTAASKILEPFVPQYESTVTSQLWRDGAVMLGKLNLDEFA-MGSSNETSAY----GPVVNPWRKAGSNQALTPGGSSGGSAAAVAADLCLGATATDTGGSIRQPAAFTGTVGIKPTYG 200          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_BORBU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Borrelia burgdorferi GN=gatA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.694e-14
Identity = 65/200 (32.50%), Postives = 100/200 (50.00%), Query Frame = 3
Query:  174 REATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            R+  I D+ LA+K N               + LN  ++G IE   D+L  A + D   K      L  L G+ I +KDNI+ +DK + T  S  L   + P DA V+ +L+  GAI++G+ ++ E++   S+   S +          YV+     GSS GSA  VA   A  SLG++T GS+  P+S + ++G KP+ G
Sbjct:   33 RKCKIYDILLAYKNN---------------YELNKDINGYIEFFDDSLEIAKRYDDCLKNCELEDLP-LIGMLIAVKDNISIQDK-SLTCASEILKGYISPYDATVIKRLKNKGAILIGRTNMDEFA-MGSTCEFSYYGATLNPLNREYVIG----GSSGGSAAVVAAFQAPFSLGSDTGGSVRLPASFSGILGFKPSYG 210          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_STRP3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M3 GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 66/198 (33.33%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA-LSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            TI++L       ++++ +L +  L +I      +   I V+ +A L QA   D     K   S   + GIP+ +KDNI+TK  + TTA S  L       DA  V        I++GK ++ E++   S++  S F     + KN +  +  P GSS GSA +VA+    +SLG++T GSI  P++ N VVGLKP  G
Sbjct:    7 TIEELHDLLVAKEISATELTQKTLEDIKSREEAVGSFITVSEEAALKQAAAID----AKGIDSDNLMSGIPLAVKDNISTKGIL-TTAASKMLYNYEPIFDATSVANAYAKDMIVIGKTNMDEFAMGGSTET-SYFK----KTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYG 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_STRP1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M1 GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 65/198 (32.83%), Postives = 103/198 (52.02%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            TI++L       ++++ +L +  L +I      +   I V+ + AL QA   D     K   +   + GIP+ +KDNI+TK+ + TTA S  L       +A  V        I++GK ++ E++   S++  S F     + KN +  +  P GSS GSA +VA+    +SLG++T GSI  P++ NSVVGLKP  G
Sbjct:    7 TIEELHDLLVAKEISATELTQATLEDIKSREEAVGSFITVSEEVALKQAAAID----AKGIDADNLMSGIPLAVKDNISTKEIL-TTAASKMLYNYEPIFNATSVANAYAKDMIVIGKTNMDEFAMGGSTET-SYFK----KTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNSVVGLKPTYG 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PARL1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 63/206 (30.58%), Postives = 99/206 (48.06%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+   + A K+ ++TS +L   YL E+      L+  + V  D   +  KA   +  K  G    L G+P+ +KD   TKD + TTA S+ L       ++ V   L + GA++LGK +  E++   S++     +   G   NP+          P GSS GS+ +VA NL   +  T+T GSI  P++    VGLKP  G
Sbjct:    4 LTKLTLAGARDALKKKEITSTELTGAYLKEMEAA-AALNAYVTVTADKAMEMAKASDAKLAKGEGG--ALEGLPLGIKDLYCTKDVL-TTACSHILDGFKPAYESTVTSNLWRDGAVMLGKLNNDEFAMGSSNE-----TSHYGSVVNPWRRKGSDAKLVPGGSSGGSSAAVAANLCLAATATDTGGSIRQPAAFTGTVGLKPTYG 200          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_METVS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 60/179 (33.52%), Postives = 94/179 (52.51%), Query Frame = 3
Query:  240 VEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            V  YL +I + +  ++  I++N + + +  K D E+  K     + L+G  I +K NI  +     +  S  L       DA V+ KLR  GA+I+G  ++ E+++       SG +   G  KNP  L   P GSSSGSA +V+ +L  ++LG++T GSI  P+S   VVG KP  G+
Sbjct:    6 VSDYLEKIEKSD--INAFIDLNGERVLKEAK-DLEKNEKLKN--KSLYGKIIAVKSNINVEG-YKISCASKTLDNYTGTYDATVIKKLRSEGALIIGMTNMDEFAS-----GSSGETSYYGPTKNPKALDRIPGGSSSGSAAAVSADLCDMALGSDTGGSIRNPASHCGVVGFKPTYGV 173          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_METM6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 59/183 (32.24%), Postives = 96/183 (52.46%), Query Frame = 3
Query:  240 VEFYLGEIHRLNPLLHGVIEVNPDAL----SQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            V  YL +I + +  ++  I+VN + +     + +K DY +        + L+G  + +K NI  K     +  S  L +     DA VV KLR  GA+I+G  ++ E+++       SG +   G  KNP  +   P GSSSGSA +VA +L  +++G++T GSI  P+S   +VG KP+ G+
Sbjct:    6 VSDYLEKIEKSD--VNAFIDVNSEKVLKEAEELEKNDYLKN-------KPLYGKIVAVKSNINVKG-YKISCASKTLEKYTGTYDATVVKKLRLQGALIVGMTNMDEFAS-----GSSGETSYFGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGV 173          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_HELHP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Helicobacter hepaticus GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 52/130 (40.00%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  384 GIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            G+PIL+KDNI  K     T  S  L   V P +A V+ KL +      G+A++ E++   +++     S   G+ KNP   S  P GSS GSA +VA  LA  SLG++T GSI  P+     VGLKP+ G
Sbjct:   45 GVPILIKDNINVKG-WEITCASKILKGYVSPYNASVITKLHENKMCAFGRANMDEFAMGSTTE-----SSCYGRVKNPLDTSRVPGGSSGGSAAAVAAGLAIASLGSDTGGSIRQPAGFCGCVGLKPSYG 168          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_STRPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 65/198 (32.83%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA-LSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            TI++L       ++++ +L +  L +I      +   I V+ +A L QA   D     K   +   + GIP+ +KDNI+TK  + TTA S  L       DA  V        I++GK ++ E++   S++  S F     + KN +  +  P GSS GSA +VA+    +SLG++T GSI  P++ N VVGLKP  G
Sbjct:    7 TIEELHDLLVAKEISATELTQKTLEDIKSREEAVGSFITVSEEAALKQAAAID----AKGIDADNLMSGIPLAVKDNISTKGTL-TTAASKMLYNYEPIFDATSVANAYAKDMIVIGKTNMDEFAMGGSTET-SYFK----KTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYG 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_RHOS5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 67/204 (32.84%), Postives = 108/204 (52.94%), Query Frame = 3
Query:  177 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPR-DAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLS---ADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            E TI + + A  + +L++  L    L  I    PL +  + + P+ AL QA  +D  R+ + AG+L   +GIP+ +KD   T+   +  A +  +L+   P  ++ V  KL  AGA++LGK ++ E++   SS   S +    G   NP+ +      P GSS GSA +VA +L   + GT+T GSI  P++   +VG+KP  G
Sbjct:    5 ELTIAEARDALAKGELSAVDLTMACLTAIDAGTPL-NAFVHLTPEIALDQARASD-ARRGEGAGAL---NGIPLGIKDLFCTRGVASQAASN--ILKGFKPEYESTVTSKLFAAGAVMLGKLNMDEFA-MGSSNETSCY----GDAVNPWKVDDRKLTPGGSSGGSAAAVAADLCLGATGTDTGGSIRQPAAFTGIVGIKPTYG 196          
The following BLAST results are available for this feature:
BLAST of CK934430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CAUSK5.694e-1432.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BORBU5.694e-1432.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_STRP37.437e-1433.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRP17.437e-1432.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PARL17.437e-1430.58Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METVS7.437e-1433.52Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METM67.437e-1432.24Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_HELHP7.437e-1440.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_STRPD9.712e-1432.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_RHOS59.712e-1432.84Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934430 ID=CK934430; Name=CK934430; organism=Citrus sinensis; type=EST; length=780bp
GCGGGGATCCATCTCATCCAACTCCGAGCCNNNCAAAGTGACCATCGATG
CATTGCCTAAAAATGGCTACCAGTAGTATCGCAATACTGGCCTTTTCTTT
GTTTTCCCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAAAGTA
ATGCCATTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAG
CTCGCTTTCAAGCAAAACAAGCTCACGTCCCGGCAGCTGGTTGAATTTTA
CCTCGGAGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGG
TGAACCCCGATGCACTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAG
GTTAAGGCAGCAGGCTCACTGCGGGGCTTGCACGGGATTCCTATTCTTCT
TAAGGATAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGT
ATGCTCTGCTCCGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAG
TTGAGGAAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTG
GTCTAACTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGGG
GCCAGGGAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGC
AGTGGCTCAGCAATTTCAGTAGCTACAAACTTGGCTGCCGTGTCACTGGG
AACTGAAACGGATGGTTCCATTCTATGTCCGTCCAGTTCTAACTCAGTAG
TGGGACTCAAACCAGCCCTTGGTCTCACCA
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