CK934430

Overview
NameCK934430
Unique NameCK934430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_ACIAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter sp. (strain ADP1) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22
Identity = 73/202 (36.14%), Postives = 109/202 (53.96%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            +   ++++L     Q + +SR+L + YL  I +++  +   + V  + AL+QAD AD  R+   AG L G   +P+  KD   TK  + TTAGS  L   + P +A VV K   AG + LGK ++ E++   +S+     S   G   NP+ L   P GSS GSA +VA +LA  + GT+T GSI  P+S   + GLKP  G
Sbjct:    4 LHRLSVRELAEGLGQAQFSSRELTQHYLNRIDKIDAQVKSYVTVTHEQALAQADAADALRQAGNAGFLTG---VPLAHKDIFCTKG-IKTTAGSKMLDNFISPYNATVVEKANAAGLVTLGKLNMDEFAMGSTSE-----SSYFGATCNPWALDRVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_METCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylococcus capsulatus GN=gatA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.350e-22
Identity = 77/198 (38.89%), Postives = 108/198 (54.55%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            T+ +L    ++ + +S +L + +L  I RL+P L+  I   P+ AL+QA  AD ER  K  G    L GIPI  KD   TK  + T+ GS  L   V P DA VV +   AGA++LGK ++ E++   SS   S +    G  KNP+  +  P GSS GSA +VA  L   + GT+T GSI  P++   + GLKP  G
Sbjct:    5 TLAELAAGLERREFSSVELTQAHLARIERLDPALNSFITTTPEIALAQARAAD-ERLAK--GEAGPLTGIPIAQKDIFCTKG-VRTSCGSRMLDSFVSPYDACVVERFNAAGAVMLGKLNMDEFA-MGSSNETSYY----GPVKNPWNTATVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAAFCGITGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSEAB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=gatA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.681e-22
Identity = 72/202 (35.64%), Postives = 106/202 (52.48%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++  A    + ++ +L    LG I +L+P L+  I +  D A++QA  AD  R   A G    L G PI  KD   T+  + T+ GS  L   V P DA VV KL  AGA+ LGK ++ E++   S++     S   G   NP+ L   P GSS GSA +VA  L   + GT+T GSI  P++  ++ G+KP  G
Sbjct:    2 LHQLTLAEIARALADKQFSAEELTRTLLGRIRQLDPQLNSFISITDDLAIAQAKAADERR---ANGENGALLGAPIAHKDLFCTQG-VRTSCGSKMLDNFVSPYDATVVEKLAAAGAVTLGKLNMDEFAMGSSNQ-----SSHYGAVNNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYG 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSEA8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas aeruginosa (strain LESB58) GN=gatA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.681e-22
Identity = 72/202 (35.64%), Postives = 106/202 (52.48%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++  A    + ++ +L    LG I +L+P L+  I +  D A++QA  AD  R   A G    L G PI  KD   T+  + T+ GS  L   V P DA VV KL  AGA+ LGK ++ E++   S++     S   G   NP+ L   P GSS GSA +VA  L   + GT+T GSI  P++  ++ G+KP  G
Sbjct:    2 LHQLTLAEIARALADKQFSAEELTRTLLGRIRQLDPQLNSFISITDDLAIAQAKAADERR---ANGENGALLGAPIAHKDLFCTQG-VRTSCGSKMLDNFVSPYDATVVEKLAAAGAVTLGKLNMDEFAMGSSNQ-----SSHYGAVNNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYG 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PELPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter propionicus (strain DSM 2379) GN=gatA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.681e-22
Identity = 72/200 (36.00%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  177 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + T+ +L    K  +++SR+     L  I  L P ++  I V P+ AL++A+ AD  R++ AAG    L GIP+ +KD   T+  + TT GS  L   + P  A    KL++ G ++LGK +  E++   S++     S   G  +NP+     P GSS GSA ++A   A V+LGT+T GSI  P+S    VGLKP  G
Sbjct:    5 DLTLHELHAKLKSKEVSSREATSAMLDRIAELEPRINAFITVTPERALAEAEAAD--RRI-AAGEADVLTGIPLAVKDIFLTEGTL-TTCGSRILNNFIPPYSATSFEKLKQRGMVLLGKLNQDEFAMGSSNE-----SSASGPCRNPWNTDCIPGGSSGGSAAAIAARQATVTLGTDTGGSIRQPASHCGCVGLKPTYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_MORCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Moraxella catarrhalis GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.690e-22
Identity = 73/202 (36.14%), Postives = 109/202 (53.96%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            +   ++ +L    K  + +S +LVE +   I+RL+  ++  I  + D AL+QA  AD   K++A G  R L G+P+  KDN+ TK  + TTAGS  L   V P DA VV  +  +G + LGK ++ E++   S    S F    G   NP+ +   P GSS GSA +VA     V+ G++T GSI  P+S   + G+KP  G
Sbjct:    4 LHHLSVHELADGLKNKQFSSHELVEHFANRINRLDGQINSFITKDFDNALAQAKLAD---KLRAKGDNRPLLGVPMAHKDNLCTKGVL-TTAGSKMLYNFVSPYDATVVDSIANSGFVSLGKLNMDEFA-MGSDNESSYF----GAVHNPWDVQRVPGGSSGGSAAAVAAGFVPVATGSDTGGSIRQPASFCGITGIKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_GEOUR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter uraniireducens (strain Rf4) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.266e-21
Identity = 74/200 (37.00%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  177 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            E TI +L    K+ +++S +     L  I  + P ++  I V P+ AL  A+ AD  R++ AAG ++ L GIPI LKD   TK  + TT  S  L   + P DA  V +L+  G +++GK +  E++   S++     S   G+  NP+ L   P GSS GSA ++A   A  +LGT+T GSI  P+S    VGLKP  G
Sbjct:    5 ELTIHELHDKLKKKEVSSVEATRALLARIDAVEPRVNAFITVTPEEALKNAEAAD--RRI-AAGDMQLLTGIPIALKDIFLTKG-VRTTCASRILDNFIPPYDATSVARLKAQGMVLVGKLNQDEFAMGSSTE-----SSYYGKTHNPWNLECIPGGSSGGSAAAIAARQAIATLGTDTGGSIRQPASHCGCVGLKPTYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_GEOSF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter sp. (strain FRC-32) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.266e-21
Identity = 74/200 (37.00%), Postives = 105/200 (52.50%), Query Frame = 3
Query:  177 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            E TI +L    K+ +++S +  E  L  I  + P ++  I V  D AL  A +AD   K  A G +  L GIP+ LKD   TK  + TT  S  L   + P DA  V +L+  GA+++GK +  E++   S++     S   G+  NP+ L   P GSS GSA ++A   A  +LGT+T GSI  P+S    VGLKP  G
Sbjct:    5 ELTIHELHDKLKKKEVSSVEATESMLARIEAVEPKVNAFITVTADQALKDAAEAD---KRIADGDMDKLTGIPVALKDIFLTKG-VRTTCASRILENFIPPYDATSVARLKARGAVLVGKLNQDEFAMGSSTE-----SSYFGKTSNPWNLECIPGGSSGGSAAAIAAQQATATLGTDTGGSIRQPASHCGCVGLKPTYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_DESAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.266e-21
Identity = 73/202 (36.14%), Postives = 108/202 (53.47%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + E TI   +      +++S+ L +  L  I  + P +   + V+ + A+  A KAD   K  A G    L GIP+ +KD + TK  + TT  S  L   V P DA  + KL++AGA+++GK ++ E++   SS   S F       KNP+ L+  P GSS GSA +VA ++   + G++T GSI  P S  SVVGLKP  G
Sbjct:    3 LHELTIGQAREKLLSKEISSQDLTKAVLDRIEAVEPQVDAYLTVSKEEAMEAAQKAD---KALAQGETAPLCGIPLAIKDVMCTKGVL-TTCASKILGNFVPPYDATSITKLKEAGAVLVGKTNMDEFA-MGSSTENSAFKTT----KNPWDLTRTPGGSSGGSAAAVAADMCLGAFGSDTGGSIRQPGSHCSVVGLKPTYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_BIFLI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.266e-21
Identity = 76/191 (39.79%), Postives = 103/191 (53.93%), Query Frame = 3
Query:  204 AFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            A K+  +TSR+LVE +L  I    P +   ++V+ D AL QAD  D  +  +   +L  L G+PI +KD I TK  + TTA S  L   V P DA V+ KL+ AG  ILGK +L E++   SS   S +        NP+     P GS  GSA +VA   A ++LGT+T GSI  P +    VG+KP  G
Sbjct:   19 AIKKGDVTSRELVEAHLKVIEAAEPSIKAFLKVSGDVALEQADAFD-AKSAEDKAALPELAGVPIAIKDMIVTKG-IETTAASKILEGWVPPYDATVIEKLKAAGMPILGKTNLDEFAQ-GSSTEHSAYQTT----HNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYG 202          
The following BLAST results are available for this feature:
BLAST of CK934430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_ACIAD3.330e-2236.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_METCA4.350e-2238.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_PSEAB5.681e-2235.64Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PSEA85.681e-2235.64Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PELPD5.681e-2236.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_MORCA9.690e-2236.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_GEOUR1.266e-2137.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_GEOSF1.266e-2137.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_DESAA1.266e-2136.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_BIFLI1.266e-2139.79Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934430 ID=CK934430; Name=CK934430; organism=Citrus sinensis; type=EST; length=780bp
GCGGGGATCCATCTCATCCAACTCCGAGCCNNNCAAAGTGACCATCGATG
CATTGCCTAAAAATGGCTACCAGTAGTATCGCAATACTGGCCTTTTCTTT
GTTTTCCCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAAAGTA
ATGCCATTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAG
CTCGCTTTCAAGCAAAACAAGCTCACGTCCCGGCAGCTGGTTGAATTTTA
CCTCGGAGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGG
TGAACCCCGATGCACTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAG
GTTAAGGCAGCAGGCTCACTGCGGGGCTTGCACGGGATTCCTATTCTTCT
TAAGGATAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGT
ATGCTCTGCTCCGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAG
TTGAGGAAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTG
GTCTAACTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGGG
GCCAGGGAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGC
AGTGGCTCAGCAATTTCAGTAGCTACAAACTTGGCTGCCGTGTCACTGGG
AACTGAAACGGATGGTTCCATTCTATGTCCGTCCAGTTCTAACTCAGTAG
TGGGACTCAAACCAGCCCTTGGTCTCACCA
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