CK934430

Overview
NameCK934430
Unique NameCK934430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_ACIC1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.266e-21
Identity = 70/197 (35.53%), Postives = 107/197 (54.31%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            T  +L       ++++ ++   +L  I  ++P +H  + V+ D    A +A  + ++ A   L  L G+P+ LKD   T+  M TT GS  L   + P DA VV K+R AG +ILGK ++ E++   SS   S F    G  +NP+ LS  P GSS GSA +VA   A +++GT+T GSI  P++   +VG KP  G
Sbjct:    8 TAVELAAMIAAREVSAEEVTRAHLDRIAAVDPAVHAFLYVDADGALTAARA-VDARLAAGERLGPLAGVPLALKDVFTTRG-MPTTCGSKILEGWIPPYDATVVQKIRDAGIVILGKTNMDEFA-MGSSTENSAF----GPTRNPWDLSRIPGGSSGGSAAAVAAFEAPLAIGTDTGGSIRQPAAVTGIVGTKPTYG 197          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_THIDA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiobacillus denitrificans (strain ATCC 25259) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.653e-21
Identity = 77/194 (39.69%), Postives = 105/194 (54.12%), Query Frame = 3
Query:  198 QLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            QLA KQ  ++SR+L + YL  I  LNP ++  I V+P+  L++A  AD    + A G+   L G+PI  KD   T D   TT GS  L   V P DA V+ + + AG   LGK ++ E++   SS   S F    G  KNP+     P GSS G+A  VA  +A  + GT+T GSI  P++   + GLKP  GL
Sbjct:   12 QLAAKQ--VSSRELAQQYLDRIAALNPTINAFITVDPEKTLAEAAAAD---ALIAGGAAGPLTGVPIAHKDIFCT-DGWLTTCGSKMLANFVAPYDAHVIERCKAAGMPSLGKTNMDEFA-MGSSNETSFF----GAVKNPWNAGYVPGGSSGGAAACVAARMAPAATGTDTGGSIRQPAALCGITGLKPTYGL 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSESM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas syringae pv. tomato GN=gatA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.653e-21
Identity = 71/202 (35.15%), Postives = 105/202 (51.98%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++     + K +S +L    L  I +L+P L+  I +  D A++QA  AD  R   AAG    L G P+  KD   T+  + T+ GS  L     P DA VV KL  AG + LGK ++ E++   +++     S   G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++  ++ GLKP  G
Sbjct:    1 MHQMTLAEIARGLAEKKFSSEELTRVLLSRIAQLDPQLNSFISLTEDLAITQAQAADARR---AAGENGPLLGAPLAHKDLFCTQG-IRTSCGSRMLDNFKAPYDATVVSKLASAGTVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLECVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_BIFLO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bifidobacterium longum GN=gatA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.653e-21
Identity = 76/191 (39.79%), Postives = 103/191 (53.93%), Query Frame = 3
Query:  204 AFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            A K+  +TSR+LVE +L  I    P +   ++V+ D AL QAD  D  +  +   +L  L G+PI +KD I TK  + TTA S  L   V P DA V+ KL+ AG  ILGK +L E++   SS   S +        NP+     P GS  GSA +VA   A ++LGT+T GSI  P +    VG+KP  G
Sbjct:   19 AVKKGDVTSRELVEAHLKVIEAAEPSIKAFLKVSGDVALEQADAFD-AKSAEDKAALPELAGVPIAIKDMIVTKG-IETTAASKILEGWVPPYDATVIEKLKAAGMPILGKTNLDEFAQ-GSSTEHSAYQTT----HNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYG 202          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_BIFLD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bifidobacterium longum (strain DJO10A) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.653e-21
Identity = 76/191 (39.79%), Postives = 103/191 (53.93%), Query Frame = 3
Query:  204 AFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            A K+  +TSR+LVE +L  I    P +   ++V+ D AL QAD  D  +  +   +L  L G+PI +KD I TK  + TTA S  L   V P DA V+ KL+ AG  ILGK +L E++   SS   S +        NP+     P GS  GSA +VA   A ++LGT+T GSI  P +    VG+KP  G
Sbjct:   19 AVKKGDVTSRELVEAHLKVIEAAEPSIKAFLKVSGDVALEQADAFD-AKSAEDKAALPELAGVPIAIKDMIVTKG-IETTAASKILEGWVPPYDATVIEKLKAAGMPILGKTNLDEFAQ-GSSTEHSAYQTT----HNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYG 202          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_AZOSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azoarcus sp. (strain BH72) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.653e-21
Identity = 71/200 (35.50%), Postives = 110/200 (55.00%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            A++ +L+ A    +++S +L   +L  I   NP L+  I ++ + AL+ A  AD      AAG+   L GIP+  KD   T+  + TT GS  L   V P DA VV +L+ AGA+ LGK ++ E++   S++     S   G  +NP+  +  P GSS GSA +VA  L  ++ G++T GS+  P+S   V G+KP  G+
Sbjct:    4 ASVSELRRALDTRQVSSVELATLFLDRIAERNPALNAFITIDREGALAAARAADARI---AAGTAGPLTGIPLAHKDLFCTEGVL-TTCGSKMLADFVSPYDAHVVSRLKDAGAVSLGKTNMDEFAMGSSNE-----SSHYGAVRNPWDTTRIPGGSSGGSAAAVAARLVPLATGSDTGGSVRQPASHTGVTGIKPTYGV 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_SYNPX (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain WH8102) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.159e-21
Identity = 72/198 (36.36%), Postives = 111/198 (56.06%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            TI   +   +   ++SR+LV+ +L  + +  P L+  +EV  + A + AD+ D  R   A   L  L G+P+ +KDN+ T+  + TT  S  L + V P ++ V  +L  AGA+++GK +L E++   S++  S F    G  KNP+ +   P GSS GSA +VA+     SLG++T GSI  P+S   VVGLKP  G
Sbjct:    2 TISAWRQRLQAGGVSSRELVDEHLQRLEQSEPSLNAFVEVTAERARADADRVDQARA--AGEDLGPLAGLPLAIKDNLCTRG-VRTTCSSRMLEQFVPPYESTVTDRLWGAGAVLVGKTNLDEFAMGGSTET-SAF----GATKNPWNIEHVPGGSSGGSAAAVASGSCLASLGSDTGGSIRQPASFCGVVGLKPTYG 191          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PELCD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.159e-21
Identity = 77/202 (38.12%), Postives = 105/202 (51.98%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA-LSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + TI +LQ   K  +++SR+L + +L  I   +  +   I  + +A L  A+ AD      AAG+   L GIP+ LKD   T+  M TT  S  L   V P     V KL++  A+ILGK ++ E++   SS   S F    G  KNP+     P GSS GSA  VA   A  +LGT+T GSI  P+S   VVGLKP  G
Sbjct:    3 LTDLTIHELQALLKNREISSRELTQAFLTRIADTDQRIGAFITQSEEAALKNAEAADARL---AAGNAASLTGIPLALKDIFITEG-MRTTCASRILDNFVPPYSGTAVRKLQEQDAVILGKLNMDEFA-MGSSNENSAF----GTVKNPWNQDCVPGGSSGGSAACVAARQAVATLGTDTGGSIRQPASHCGVVGLKPTYG 195          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_EXIS2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.159e-21
Identity = 75/200 (37.50%), Postives = 105/200 (52.50%), Query Frame = 3
Query:  177 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            E  +K+L    K  ++   +LV+     I R++  +   + +N DA  QA + D   K +A      L G+PI +KDNI TK  M TT GS  L   V   DA VV +L +AGAI +GK ++ E++   SS   S +       +NP+     P GSS GSA +VA      SLG++T GSI  P++   VVGLKP  GL
Sbjct:    5 EHGVKNLHTLVKDGEVKVSELVQESFDRIDRVDGKIGAFLSLNEDAFEQAKRMDEIAKHEA----NPLFGLPIGVKDNIVTKG-MTTTCGSKFLENFVPAHDATVVERLHEAGAITIGKLNMDEFA-MGSSNENSAYK----PVRNPWNTKHVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGL 194          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_DECAR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dechloromonas aromatica (strain RCB) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.159e-21
Identity = 74/200 (37.00%), Postives = 111/200 (55.50%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLR-KAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            A++K+L LA    K++S +L   +L  I RLNP L+  + V+ +   Q  + D + ++ AAG+   L GIPI  KD    +  ++T  GS  L   V P DA V+ K+  +AG + LGK ++ E++   SS   S F    G  +NP+     P GSS GSA +VA  LA  + GT+T GSI  P++  ++ GLKP  G+
Sbjct:    4 ASLKELSLALAAKKVSSVELSSLFLDRIERLNPTLNAFVTVDREKSLQMAR-DADARI-AAGTAGPLTGIPIAQKDIFCAEGWLST-CGSKMLANFVSPYDATVIRKMHAEAGLVSLGKTNMDEFA-MGSSNETSFF----GSVRNPWDTQRVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPAALCNLTGLKPTYGV 195          
The following BLAST results are available for this feature:
BLAST of CK934430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_ACIC11.266e-2135.53Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_THIDA1.653e-2139.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_PSESM1.653e-2135.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_BIFLO1.653e-2139.79Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BIFLD1.653e-2139.79Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_AZOSB1.653e-2135.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_SYNPX2.159e-2136.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PELCD2.159e-2138.12Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_EXIS22.159e-2137.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_DECAR2.159e-2137.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934430 ID=CK934430; Name=CK934430; organism=Citrus sinensis; type=EST; length=780bp
GCGGGGATCCATCTCATCCAACTCCGAGCCNNNCAAAGTGACCATCGATG
CATTGCCTAAAAATGGCTACCAGTAGTATCGCAATACTGGCCTTTTCTTT
GTTTTCCCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAAAGTA
ATGCCATTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAG
CTCGCTTTCAAGCAAAACAAGCTCACGTCCCGGCAGCTGGTTGAATTTTA
CCTCGGAGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGG
TGAACCCCGATGCACTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAG
GTTAAGGCAGCAGGCTCACTGCGGGGCTTGCACGGGATTCCTATTCTTCT
TAAGGATAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGT
ATGCTCTGCTCCGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAG
TTGAGGAAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTG
GTCTAACTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGGG
GCCAGGGAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGC
AGTGGCTCAGCAATTTCAGTAGCTACAAACTTGGCTGCCGTGTCACTGGG
AACTGAAACGGATGGTTCCATTCTATGTCCGTCCAGTTCTAACTCAGTAG
TGGGACTCAAACCAGCCCTTGGTCTCACCA
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