CK934430

Overview
NameCK934430
Unique NameCK934430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CYAP4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.159e-21
Identity = 69/200 (34.50%), Postives = 113/200 (56.50%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            A+I++L       + +++++ +  L +I +L P +H  + +  + AL+QA++ D  +++     +  L GIPI +KDN+ TK  + TT GS  L   + P ++ V  +L  AGA+++GK +L E++   SS   S +        NP+ L   P GSS GSA +VA     ++LG++T GSI  P+S   VVGLKP  GL
Sbjct:    2 ASIRELHQQLVSKERSAKEITQDALEKIQQLEPKVHAFLTLTAEQALAQAERVD--QQIATGTEIGLLAGIPIAIKDNLCTKG-IPTTCGSKILQGFIPPYESTVTSRLAAAGAVMVGKTNLDEFA-MGSSTENSAYQLTA----NPWDLQRVPGGSSGGSAAAVAAGETLIALGSDTGGSIRQPASFCGVVGLKPTYGL 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_SULSY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.819e-21
Identity = 70/198 (35.35%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            ++K+L    K  ++   ++VE ++   +++ P +   +    D AL +A K D E  +    ++  L G+PI +KDNI+TKD + TT  S  L   V   DA V+ +L+  G +I GK +L E++   S++  + F  R     NP+ L   P GSS GSA  VA+ +A  SLG++T GSI  P++   VVGLKP  G
Sbjct:    7 SLKELSDLVKSKEVKPSEIVEAFIERKNQVEPKIKAYVTALDDLALEKAKKRDQE--LTKLENIPDLFGLPIAIKDNISTKD-IKTTCSSKMLENFVPVYDATVIERLKSQGYVITGKTNLDEFAMGSSTENSAFFPTR-----NPWDLERVPGGSSGGSAAVVASGMAPASLGSDTGGSIRQPAAFCGVVGLKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSE14 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.819e-21
Identity = 71/202 (35.15%), Postives = 104/202 (51.49%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++     + K +S +L    L  I  L+P L+  I +  D A++QA  AD  R   AAG    L G P+  KD   T+  + T+ GS  L     P DA VV KL  AG + LGK ++ E++   +++     S   G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++  ++ GLKP  G
Sbjct:    1 MHQMTLAEIARGLAEKKFSSEELTRVLLSRIATLDPQLNSFISLTEDLAITQAQAADARR---AAGENGPLLGAPLAHKDLFCTQG-IRTSCGSRMLDNFKAPYDATVVSKLASAGTVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLQCVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_BURXL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia xenovorans (strain LB400) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.819e-21
Identity = 76/202 (37.62%), Postives = 109/202 (53.96%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + E ++ +L+ A    + ++ +L + YL  I   N L +  I+V+PD  L+QA  AD       AG L GL   PI  KD   TK    +TAGS  L     P DA VV +L+ AG + +GK ++ E++   SS   S F    G  +NP+ + A P GSS GSA +VA  LA  + GT+T GSI  P+S + + G+KP  G
Sbjct:    1 MHEKSLTELRAALTARECSAVELAQLYLKRIEAANSL-NAFIQVDPDLTLAQAKAADALLHTGHAGPLVGL---PIAHKDVFVTKG-WRSTAGSKMLSNYESPFDATVVARLQNAGMVCVGKTNMDEFA-MGSSNENSYF----GPVQNPWDVKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYG 192          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_ROSS1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Roseiflexus sp. (strain RS-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.682e-21
Identity = 72/202 (35.64%), Postives = 109/202 (53.96%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ D + A  + ++TS +L +  L  I  + P +   + ++ + A +QA  AD  R   AAG    L GIP+ +KD I+T+  + TT  S  L   V   DA  V +L+ AGA+++GK +  E++   SS   S F     Q +NP+ L   P GSS GSA +VA   A  +LGT+T GSI  P++   + GLKP  G
Sbjct:    4 LHQLTLSDAREALMRGEITSVELTDALLARIAAVEPQVRAFLTIDAEGARAQAQAADARR---AAGDTSPLLGIPLGIKDVISTQG-VRTTCASKMLENYVPVYDATAVARLKAAGAVLIGKLNCDEFA-MGSSTENSAFQ----QTRNPWNLERVPGGSSGGSAAAVAAGEAPATLGTDTGGSIRQPAALCGITGLKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSEPK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain KT2440) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.682e-21
Identity = 72/202 (35.64%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++         +S +L    L  I +L+P ++  I V  D AL QA  AD  R   AAG    L G PI  KD   T   + T+ GS  L     P DA VV KL +AG + LGK ++ E++   +++     S   G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++  ++ GLKP  G
Sbjct:    1 MHQLTLAEIARGLADKSFSSEELTGALLARIKQLDPQINSFISVTEDLALGQARAADARR---AAGETSALLGAPIAHKDLFCTNG-VRTSCGSKMLDNFKAPYDATVVAKLAEAGMVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSEPG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain GB-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.682e-21
Identity = 72/202 (35.64%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++         +S +L    L  I +L+P ++  I V  D AL QA  AD  R   AAG    L G PI  KD   T   + T+ GS  L     P DA VV KL +AG + LGK ++ E++   +++     S   G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++  ++ GLKP  G
Sbjct:    1 MHQFTLAEIARGLADKSFSSEELTRALLARIKQLDPQINSFISVTEDLALGQARAADARR---AAGETGALLGAPIAHKDLFCTNG-VRTSCGSKMLDNFKAPYDATVVAKLAEAGMVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_CLOK1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium kluyveri (strain NBRC 12016) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.682e-21
Identity = 72/197 (36.55%), Postives = 107/197 (54.31%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            T   L+   K  +++  ++   YL  +  ++  L   + V  + L Q  K + ++K+     L  L GIPI +KDNI+ ++  NT A S  L   + P DA VV K++    II+GK ++ E++   S++  S    R     NP+ L+  P GSS GSAISVA   AA+S+GT+T GSI  P+S   VVGLKP  G
Sbjct:    7 TAHKLKDMIKNREISVEEIARTYLDRVDEVDGKLGAYLYVASEGLLQKAK-ELDKKISRGEILGKLFGIPISVKDNISVENMQNTCA-SRMLTGYISPYDAHVVEKIKFHQGIIIGKTNMDEFAMGSSTENSSIKLSR-----NPWDLNRVPGGSSGGSAISVAAGEAALSIGTDTGGSIRQPASFCGVVGLKPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_BURPP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.682e-21
Identity = 76/202 (37.62%), Postives = 109/202 (53.96%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + E ++ +L+ A    + ++ +L + YL  I   N L +  I+V+PD  L+QA  AD       AG L GL   PI  KD   TK    +TAGS  L     P DA VV +L+ AG + +GK ++ E++   SS   S F    G  +NP+ + A P GSS GSA +VA  LA  + GT+T GSI  P+S + + G+KP  G
Sbjct:    1 MHEKSLTELRAALTAKECSAVELAQLYLKRIDAANSL-NAFIQVDPDLTLAQAKAADALLHTGHAGPLVGL---PIAHKDVFVTKG-WRSTAGSKMLSNYESPFDATVVARLQNAGMVCVGKTNMDEFA-MGSSNENSYF----GPVQNPWDVKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYG 192          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_ANAVT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.682e-21
Identity = 75/200 (37.50%), Postives = 107/200 (53.50%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            A+I++L     + + ++ ++ +  L  I  L P LH  + +    AL QA   D   K+ A   +  L GIPI +KDN+ TK  + TT  S  L   V P ++ V  KL  AGA+++GK +L E++   SS   S +        NP+ LS  P GSS GSA +VA     V+LG++T GSI  P+S   VVGLKP  GL
Sbjct:    2 ASIRELHEQLVKKERSAVEITQETLDHIQELEPKLHSFLHITAQQALEQARAVD--AKIAAGEEIGLLAGIPIGVKDNMCTKG-IPTTCASRILENFVPPYESTVTQKLLDAGAVVVGKTNLDEFA-MGSSTENSAYQVTA----NPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCGVVGLKPTYGL 193          
The following BLAST results are available for this feature:
BLAST of CK934430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CYAP42.159e-2134.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_SULSY2.819e-2135.35Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PSE142.819e-2135.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_BURXL2.819e-2137.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_ROSS13.682e-2135.64Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_PSEPK3.682e-2135.64Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PSEPG3.682e-2135.64Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_CLOK13.682e-2136.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BURPP3.682e-2137.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_ANAVT3.682e-2137.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934430 ID=CK934430; Name=CK934430; organism=Citrus sinensis; type=EST; length=780bp
GCGGGGATCCATCTCATCCAACTCCGAGCCNNNCAAAGTGACCATCGATG
CATTGCCTAAAAATGGCTACCAGTAGTATCGCAATACTGGCCTTTTCTTT
GTTTTCCCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAAAGTA
ATGCCATTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAG
CTCGCTTTCAAGCAAAACAAGCTCACGTCCCGGCAGCTGGTTGAATTTTA
CCTCGGAGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGG
TGAACCCCGATGCACTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAG
GTTAAGGCAGCAGGCTCACTGCGGGGCTTGCACGGGATTCCTATTCTTCT
TAAGGATAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGT
ATGCTCTGCTCCGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAG
TTGAGGAAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTG
GTCTAACTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGGG
GCCAGGGAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGC
AGTGGCTCAGCAATTTCAGTAGCTACAAACTTGGCTGCCGTGTCACTGGG
AACTGAAACGGATGGTTCCATTCTATGTCCGTCCAGTTCTAACTCAGTAG
TGGGACTCAAACCAGCCCTTGGTCTCACCA
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