CK934430

Overview
NameCK934430
Unique NameCK934430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_ANASP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena sp. (strain PCC 7120) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.682e-21
Identity = 75/200 (37.50%), Postives = 107/200 (53.50%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            A+I++L     + + ++ ++ +  L  I  L P LH  + +    AL QA   D   K+ A   +  L GIPI +KDN+ TK  + TT  S  L   V P ++ V  KL  AGA+++GK +L E++   SS   S +        NP+ LS  P GSS GSA +VA     V+LG++T GSI  P+S   VVGLKP  GL
Sbjct:    2 ASIRELHEQLVKKERSAVEITQETLDHIQELEPKLHSFLHITAQQALEQARAVD--AKIAAGEEIGLLAGIPIGVKDNMCTKG-IPTTCASRILENFVPPYESTVTQKLLDAGAVVVGKTNLDEFA-MGSSTENSAYQVTA----NPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCGVVGLKPTYGL 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_NITOC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.809e-21
Identity = 72/198 (36.36%), Postives = 105/198 (53.03%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            ++ +L  A K  + +S +L + YL  I RLN  L+  I V+ + AL QA  AD    +  +G    + GIP+  KD   T   + T+ GS  L     P +A VV +L+ AGA++LGK ++ E++   SS   S +    G  KNP+     P GSS GSA +VA  L   + GT+T GSI  P++   + GLKP  G
Sbjct:    5 SLAELASALKAREFSSEELTQHYLKRIERLNEDLNSFITVSTEEALKQAKAAD---AILQSGEGSSITGIPLAHKDIFCTTG-VKTSCGSKMLDNFTAPYNATVVSRLKTAGAVMLGKTNMDEFA-MGSSNETSFY----GSVKNPWAHDRVPGGSSGGSAAAVAARLTPAATGTDTGGSIRQPAALCGITGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_MARMS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Marinomonas sp. (strain MWYL1) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.809e-21
Identity = 72/200 (36.00%), Postives = 107/200 (53.50%), Query Frame = 3
Query:  177 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            E +I  L    +   ++S +L   +L  I +L+P L+  I V+   AL QA  AD    +  +G    L GIP+  KD   T+  + TT GS  L   V P ++ V  ++++AGA++LGK ++ E++   SS   S +    G  KNP+ L   P GSS GSA ++A  LA  + GT+T GSI  P+S   + GLKP  G
Sbjct:    3 EQSISTLAQKLRNKDISSVELTRLFLARIAKLDPQLNSFITVSEQHALEQAAAADV---LLQSGKGTSLTGIPVAHKDLFCTEGTL-TTCGSKMLHNFVPPYESTVTSRIQQAGAVMLGKTNMDEFA-MGSSNENSFY----GAVKNPWNLDMVPGGSSGGSAAAIAAGLAVAATGTDTGGSIRQPASFCGITGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_THEEB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermosynechococcus elongatus (strain BP-1) GN=gatA PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 72/200 (36.00%), Postives = 111/200 (55.50%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            + I++L     + + ++ ++ + YL  I ++ P LH  + V  D AL+QA  A+ ++++ A   +  L GIP+ +KDN+ T   + TT  S  L   V P ++ V  KL+ AGAI++GK +L E++   SS   S F    G   NP+       GSS GSA +VA    A +LG++T GSI  P++   VVGLKP  GL
Sbjct:    2 SVIQELHRQLVRKERSATEITQAYLDRIAQVEPTLHSFLTVTRDRALAQA--AEVDKRLAAGEEIGLLTGIPLAIKDNLCTYG-VRTTCASKMLEHFVPPYESTVTEKLQAAGAIMVGKTNLDEFA-MGSSTENSAF----GFTANPWNPERVSGGSSGGSAAAVAARECAAALGSDTGGSIRQPAAFCGVVGLKPTYGL 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_SYNS3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain CC9311) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 71/198 (35.86%), Postives = 112/198 (56.57%), Query Frame = 3
Query:  186 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGS-LRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            I + +   +  ++++R+L + +L  I  ++  +H  +EV  D A + AD+ D   + +AAG  L  L G+PI +KDN+ TK  + TT+ S  L   V P ++ V  +L ++GA+++GK +L E++   S++  S F    G   NP+     P GSS GSA +VA      SLG++T GSI  P+S   VVGLKP  G
Sbjct:    3 IAEWRQQLESGEVSARELTDHHLARIKAVDSSVHAFLEVTADRARADADRLD---EARAAGEDLPPLAGVPIAIKDNLCTKG-IRTTSSSRMLESFVPPYESTVTDRLWRSGAVLIGKTNLDEFAMGGSTET-SAF----GPTANPWNTGYVPGGSSGGSAAAVAAGECMASLGSDTGGSIRQPASFCGVVGLKPTYG 191          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSEPW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain W619) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 72/202 (35.64%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++         +S +L    L  I +L+P L+  I V  + AL QA  AD  R   AAG    L G PI  KD   T   + T+ GS  L     P DA VV KL +AG + LGK ++ E++   +++     S   G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++  ++ GLKP  G
Sbjct:    1 MHQLTLAEIARGLADKSFSSEELTGALLARIQQLDPQLNSFISVTEELALGQARAADARR---AAGETGALLGAPIAHKDLFCTNG-VRTSCGSKMLDNFKAPYDATVVAKLAEAGMVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSEE4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas entomophila (strain L48) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 72/202 (35.64%), Postives = 103/202 (50.99%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++         +S +L    L  I +L+P L+  I V  + AL QA  AD  R   AAG    L G PI  KD   T+  + T+ GS  L     P DA VV KL +AG + LGK ++ E++   +++     S   G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++  ++ GLKP  G
Sbjct:    1 MHQLTLAEIARGLADKSFSSEELTGALLSRIKQLDPQLNSFITVTEEQALHQARAADARR---AAGETGALLGAPIAHKDLFCTQG-VRTSCGSKMLDNFTAPYDATVVAKLAEAGMVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PROM4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9211) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 72/197 (36.55%), Postives = 105/197 (53.30%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            TI + +      +++S +LV      I  ++  LH  +++  D+  +  K   E ++     L  L GIP  +KDN+ TK  + TT  S  L   V P ++ V  +L +AGAI+LGK +L E++   SS   S F    G   NP+ LS  P GSS GSA +VA+ L   +LG++T GSI  P+S   VVGLKP  G
Sbjct:    2 TIAEWRQRLNNREISSLELVNEQFARIKDVDNKLHAFLKLEEDSARENAKRIDEARLSGK-ELPPLAGIPFAIKDNLCTKG-VKTTCSSKMLESFVPPYESTVTQRLWEAGAILLGKTNLDEFA-MGSSTETSAF----GATSNPWDLSRVPGGSSGGSAAAVASGLCLAALGSDTGGSIRQPASFCGVVGLKPTYG 191          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_RALSO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia solanacearum GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 77/199 (38.69%), Postives = 106/199 (53.27%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA-LSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            +T+K L       ++++ +L   YL  I     L +  I V+P+A L+QA  AD      AAG    L GIPI  KD   T+     TAGS  L   V P DA VV +L  AG + LGK ++ E++   SS   S F    G  KNP+ ++  P GSS GSA +VA +LA  + GT+T GSI  P+S + + G+KP  G
Sbjct:    4 STLKTLSAQLAAKEVSAVELARHYLARIEARADL-NAFIHVDPEATLAQAQAADARL---AAGDAGPLAGIPIAHKDVFVTRG-WRATAGSKMLDSYVSPFDATVVERLAAAGMVTLGKTNMDEFA-MGSSNENSHF----GPVKNPWDVARVPGGSSGGSAAAVAADLAPAATGTDTGGSIRQPASFSGITGIKPTYG 192          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSEU2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 70/202 (34.65%), Postives = 103/202 (50.99%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++       K +S +L    L  I  L+P L+  I +  D A++QA  AD  R   AAG    L G P+  KD   T+  + T+ GS  L     P DA VV +L  AG + LGK ++ E++   +++     S   G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++  ++ GLKP  G
Sbjct:    1 MHQMTLAEIARGLADKKFSSEELTRVLLSRIATLDPQLNSFISLTEDLAITQAQAADARR---AAGENGPLLGAPLAHKDLFCTQG-IRTSCGSLMLDNFKAPYDATVVSRLASAGTVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLECVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGLKPTYG 193          
The following BLAST results are available for this feature:
BLAST of CK934430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_ANASP3.682e-2137.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_NITOC4.809e-2136.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_MARMS4.809e-2136.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_THEEB6.281e-2136.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_SYNS36.281e-2135.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PSEPW6.281e-2135.64Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PSEE46.281e-2135.64Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROM46.281e-2136.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_RALSO8.203e-2138.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_PSEU28.203e-2134.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934430 ID=CK934430; Name=CK934430; organism=Citrus sinensis; type=EST; length=780bp
GCGGGGATCCATCTCATCCAACTCCGAGCCNNNCAAAGTGACCATCGATG
CATTGCCTAAAAATGGCTACCAGTAGTATCGCAATACTGGCCTTTTCTTT
GTTTTCCCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAAAGTA
ATGCCATTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAG
CTCGCTTTCAAGCAAAACAAGCTCACGTCCCGGCAGCTGGTTGAATTTTA
CCTCGGAGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGG
TGAACCCCGATGCACTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAG
GTTAAGGCAGCAGGCTCACTGCGGGGCTTGCACGGGATTCCTATTCTTCT
TAAGGATAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGT
ATGCTCTGCTCCGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAG
TTGAGGAAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTG
GTCTAACTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGGG
GCCAGGGAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGC
AGTGGCTCAGCAATTTCAGTAGCTACAAACTTGGCTGCCGTGTCACTGGG
AACTGAAACGGATGGTTCCATTCTATGTCCGTCCAGTTCTAACTCAGTAG
TGGGACTCAAACCAGCCCTTGGTCTCACCA
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