CK934430

Overview
NameCK934430
Unique NameCK934430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_THICR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiomicrospira crunogena (strain XCL-2) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.071e-20
Identity = 72/198 (36.36%), Postives = 105/198 (53.03%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            ++K++    +  ++TS  L + YL  I + +  L+  + V P+ A+  A +AD E   +  G L  L GIP+  KD   T D + TT GS  L   + P DA VV   R  G  ILGK ++ E++   SS+     S   G  KNP+ L A P GSS GSA  +A  LA ++ G++T GSI  P+S   + G+KP  G
Sbjct:    5 SVKEMSEKLRNKEITSVALTQHYLDRIDQYDGELNAYVTVTPELAMEMARQAD-EMIAEGKGGL--LTGIPVAHKDIFCTLD-VKTTCGSKMLDNFIAPYDAKVVEASRALGMPILGKTNMDEFAMGSSSE-----SSYYGATKNPWDLKAVPGGSSGGSAAVIAAGLAPLATGSDTGGSIRQPASFCGITGIKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PSEP1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.071e-20
Identity = 71/202 (35.15%), Postives = 103/202 (50.99%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + + T+ ++         +S +L    L  I +L+P ++  I +  D AL+QA  AD  R   AAG    L G PI  KD   T   + T+ GS  L     P DA VV KL +AG + LGK ++ E++   +++     S   G  KNP+ L   P GSS GSA +VA  L   + GT+T GSI  P++  ++ GLKP  G
Sbjct:    1 MHQLTLAEIARGLADKSFSSEELTGALLARIKQLDPQINSFISITDDLALAQARAADARR---AAGETGVLLGAPIAHKDLFCTNG-VRTSCGSKMLDNFKAPYDATVVAKLAEAGMVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYG 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_PROMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus GN=gatA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.071e-20
Identity = 71/189 (37.57%), Postives = 106/189 (56.08%), Query Frame = 3
Query:  213 QNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGS-LRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            + +++S +L+   +  I  +   LH  + +N + A + A K D   + +AAG  L  L G+P  +KDN+ TK  + TT  S  L   + P ++ V  +L KAG I+LGK +L E++   SS   S F    G  KNP+ ++  P GSS GSA +VA+ L   +LG++T GSI  P+S   VVGLKP  G
Sbjct:   12 KGEVSSLELINQQINRIEEVENTLHSYLYLNHEKARASAIKID---EARAAGEELPPLAGVPFAIKDNLCTKG-IPTTCSSKMLEEFIPPYESTVTQRLWKAGGILLGKTNLDEFA-MGSSTETSAF----GPTKNPWDITRVPGGSSGGSAAAVASGLCTAALGSDTGGSIRQPASFCGVVGLKPTYG 191          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_ACIBL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidobacteria bacterium (strain Ellin345) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.071e-20
Identity = 76/202 (37.62%), Postives = 107/202 (52.97%), Query Frame = 3
Query:  171 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            I   TI   ++A ++ + T+  + E +  +I   +  ++  + ++ D AL+QA K D          L  L G+P+ +KD I+TK  + TTAGS  L   + P DA VV KL  AGA+ILGK +  E++   SS   S +    G  +NP   S  P GSS GSA  VA   A  SLG++T GSI  P+S   VVGL P  G
Sbjct:    3 INVLTIDATRIAIQERQATATAIAESFYKKIEAEDGEINAYLTLSRDRALAQAAKID--AIADRGDDLPRLAGLPVAIKDVISTKG-VRTTAGSKILEEFIAPYDATVVQKLEAAGAVILGKTNCDEFA-MGSSNENSAY----GPVRNPRDKSRVPGGSSGGSAAVVAAGTAVTSLGSDTGGSIRQPASFCGVVGLMPTYG 196          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_SYNY3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechocystis sp. (strain PCC 6803) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.399e-20
Identity = 71/198 (35.86%), Postives = 111/198 (56.06%), Query Frame = 3
Query:  186 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVN-PDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            I+ L       ++++  + +  L  I  ++  L   ++V  P A++QA+K D +  + A   +  L GIPI +KDN+ TK  + TT  S  L   V P ++ V  KL+KAGA+++GK +L E++   SS   SG+        NP+ L+  P GSS GSA +VA +   ++LG++T GSI  P+S   VVG+KP  GL
Sbjct:    4 IRALHQQLIDQEISAVAVAQASLARIEAVDDRLKSFLQVTAPQAIAQAEKVDAQ--IAAGEPIGLLAGIPIGIKDNLCTKGIV-TTCASQILRGFVPPYESTVTEKLQKAGAVMVGKTNLDEFA-MGSSTENSGYQVTA----NPWDLTRVPGGSSGGSAAAVAADECLIALGSDTGGSIRQPASLCGVVGMKPTYGL 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_SYNPW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain WH7803) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.827e-20
Identity = 69/187 (36.90%), Postives = 108/187 (57.75%), Query Frame = 3
Query:  219 KLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGS-LRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            ++++R+L + +L  I  + P +H  +EV  + A + AD+ D   + +A+G  L  L GIP+ +KDN+ T+  + TT  S  L + V P ++ V  +L  AGA++LGK +L E++   S++  S F    G   NP+     P GSS GSA +VA+     S+G++T GSI  P+S   VVGLKP  G
Sbjct:   14 EVSARELTDHHLARIEAVEPGIHAFLEVTAERARADADRVD---EARASGEDLPPLAGIPLAIKDNLCTRG-VRTTCSSRMLEQFVPPYESTVTERLWAAGAVLLGKTNLDEFAMGGSTET-SAF----GPTANPWNPEHVPGGSSGGSAAAVASGECLASIGSDTGGSIRQPASFCGVVGLKPTYG 191          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_ALCBS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.827e-20
Identity = 71/200 (35.50%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  183 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKV-KAAGSLRGL-HGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            T+ +L+        +SR+L E +L  I + +  L+  + V  + AL+QAD AD      +A+ S+ GL  G+PI  KD   T+  + T+ GS  L   + P  A VV K+   GA++LGK ++ E++   SS   S +    G  KNP+ L   P GSS G+A  +   LA  + GT+T GSI  P++ N++ GLKP  G
Sbjct:    5 TLTELKAGLAAGDFSSRELTEHFLARIKQYDGELNSFVTVTEEQALAQADAADATLATNRASSSVSGLLTGLPIAHKDIFCTEG-VRTSCGSKMLDNFIAPYTATVVEKMAAEGAVMLGKTNMDEFA-MGSSNETSYY----GPVKNPWDLERVPGGSSGGAAACLGARLAPAATGTDTGGSIRQPAALNNITGLKPTYG 198          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_DEIDV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.387e-20
Identity = 65/164 (39.63%), Postives = 94/164 (57.32%), Query Frame = 3
Query:  282 LHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            L+ ++ +N  A +QA  A+  R++ A G    L G+P+++KDNI       TT GS  L   V P  A    +L  AGA+I+GKA++ E++   S++     S   G   NP+ LS  P GSS GSA++VA NL  VSLG++T GS+  P++   V GLKP  G
Sbjct:   38 LNALVSLNEQAGAQA--AEVSRRL-AGGEALPLAGVPVIVKDNINVSGT-RTTCGSRILATYVSPYTATAAQRLIDAGAVIVGKANMDEFAMGSSTE-----SSASGPTLNPWDLSRVPGGSSGGSAVAVAANLTPVSLGSDTGGSVRQPAALTGVYGLKPTYG 192          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_TRIEI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Trichodesmium erythraeum (strain IMS101) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.117e-20
Identity = 75/200 (37.50%), Postives = 110/200 (55.00%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALGL 776
            A+I D+       + ++ ++ +  L  I++L P L   I V  + A++QA + D   K+ A   +  L GIPI +KDNI T+  + TT GS  L   + P ++ V  KL  AGAIILGK +L E+    SS   S +        NP+  +  P GSS GSA +VA+  + V+LG++T GSI  P+S   VVG+KP  GL
Sbjct:    2 ASISDIHQQLISKQRSAVEITQEALENINQLEPKLKSFICVTAEKAIAQARQVD--AKIAAGEKIGLLTGIPIAVKDNICTRG-IPTTCGSKILQNFIPPYESTVTQKLVDAGAIILGKTNLDEFG-MGSSTENSAYQVT----TNPWDNTRVPGGSSGGSAAAVASAESVVALGSDTGGSIRQPASFCGVVGIKPTYGL 193          
BLAST of CK934430 vs. ExPASy Swiss-Prot
Match: GATA_RALPJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia pickettii (strain 12J) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.117e-20
Identity = 77/201 (38.31%), Postives = 102/201 (50.75%), Query Frame = 3
Query:  180 ATIKDLQLAFKQNKLTSRQLVEFYLGEIH---RLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLRSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCGSSSGSAISVATNLAAVSLGTETDGSILCPSSSNSVVGLKPALG 773
            +TIK L       ++++ +L   YL  I     LN   H   E     L+QA  AD      AAG+   L G+PI  KD   T+     TAGS  L   V P DA VV +L  AG + LGK ++ E++   SS   S F    G  KNP+ L   P GSS GSA +VA +LA  + GT+T GSI  P+S + + G+KP  G
Sbjct:    4 STIKALSAQLAAKEVSAEELARHYLSRIEAGAHLNAFTHVDAEAT---LAQARAADARI---AAGNAAPLTGVPIAHKDVFVTRG-WRATAGSKMLGNYVSPFDATVVERLGAAGMVTLGKTNMDEFA-MGSSNENSAF----GAVKNPWNLEHVPGGSSGGSAAAVAADLAPAATGTDTGGSIRQPASFSGITGIKPTYG 192          
The following BLAST results are available for this feature:
BLAST of CK934430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_THICR1.071e-2036.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_PSEP11.071e-2035.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROMA1.071e-2037.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_ACIBL1.071e-2037.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_SYNY31.399e-2035.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNPW1.827e-2036.90Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_ALCBS1.827e-2035.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_DEIDV2.387e-2039.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_TRIEI3.117e-2037.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_RALPJ3.117e-2038.31Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934430 ID=CK934430; Name=CK934430; organism=Citrus sinensis; type=EST; length=780bp
GCGGGGATCCATCTCATCCAACTCCGAGCCNNNCAAAGTGACCATCGATG
CATTGCCTAAAAATGGCTACCAGTAGTATCGCAATACTGGCCTTTTCTTT
GTTTTCCCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAAAGTA
ATGCCATTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAG
CTCGCTTTCAAGCAAAACAAGCTCACGTCCCGGCAGCTGGTTGAATTTTA
CCTCGGAGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGG
TGAACCCCGATGCACTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAG
GTTAAGGCAGCAGGCTCACTGCGGGGCTTGCACGGGATTCCTATTCTTCT
TAAGGATAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGT
ATGCTCTGCTCCGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAG
TTGAGGAAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTG
GTCTAACTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGGG
GCCAGGGAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGC
AGTGGCTCAGCAATTTCAGTAGCTACAAACTTGGCTGCCGTGTCACTGGG
AACTGAAACGGATGGTTCCATTCTATGTCCGTCCAGTTCTAACTCAGTAG
TGGGACTCAAACCAGCCCTTGGTCTCACCA
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