CK934433

Overview
NameCK934433
Unique NameCK934433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.587e-16
Identity = 43/96 (44.79%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALELSSQQEY 299
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E  +++E+
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNSDIVEALNKKEH 93          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.991e-16
Identity = 47/131 (35.88%), Postives = 79/131 (60.31%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRY--------------------QKCDYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQR 344
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y                    +K + G   P+  +  AL   ++++Y K+   ++ + +S +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKENKGCESPDPDSSYALTPRTEEKYKKINEEFDNMIKSHK 130          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.022e-15
Identity = 38/70 (54.29%), Postives = 55/70 (78.57%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRY 221
            MGR ++ +++I N+ NRQ TF KR+NGL+KKA ELS+LCD E+A+I+FS+  KL+++ SS  M K L+RY
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQY-SSRDMDKLLIRY 71          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.022e-15
Identity = 42/89 (47.19%), Postives = 66/89 (74.16%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNADIIE 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.022e-15
Identity = 42/89 (47.19%), Postives = 66/89 (74.16%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNADIIE 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.022e-15
Identity = 42/89 (47.19%), Postives = 66/89 (74.16%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNADIIE 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.022e-15
Identity = 42/89 (47.19%), Postives = 66/89 (74.16%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNADIIE 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 42/89 (47.19%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNSDIVE 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 42/89 (47.19%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNSDIVE 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 42/89 (47.19%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNSDIVE 86          
The following BLAST results are available for this feature:
BLAST of CK934433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MEF2A_BOVIN4.587e-1644.79Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
MEF2C_PIG5.991e-1635.88Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
SRFC_DICDI1.022e-1554.29Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2D_XENLA1.022e-1547.19Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT1.022e-1547.19Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE1.022e-1547.19Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN1.022e-1547.19Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2C_PONAB2.973e-1547.19Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_MOUSE2.973e-1547.19Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN2.973e-1547.19Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_B02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934433 ID=CK934433; Name=CK934433; organism=Citrus sinensis; type=EST; length=908bp
GGGGGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAAC
AAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAA
GAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCA
TTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATG
GTCAAAACGCTTGTGAGGTACCAGAAGTGCGACTATGGAGCACCAGAACC
GAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATC
TGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTC
CTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGA
AAGGCAGCTTGATATGTCATTGAAGCAGATTAGATCAACAAGAACTCAGT
ACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGC
GAAGCAAATAAGACCCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAA
CACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAAC
CAGCTCAACCTCAGGGCGATAGCTTCTTTCACGCCTTGGAATGTGAACCC
ACATTGCAAATTGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGC
AGGCCCGAGTCTGAATAATTACATGCAAGGATGGCTACCATGCTAAGAGA
GCGGCGGGCATTACCAGTCAATGTATTGTAGTTGATCCATAAGAATCAGC
AACTTTGTATCCCTTTGTAAGCAACCCTATTCAGTGGCTAGGAAACACGC
ATCATAAGGATTTATTATAATAACTCTANAGTGATCCTGCACTTTAGGGA
AACTGATG
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