CK934433

Overview
NameCK934433
Unique NameCK934433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10849 contig Csv1_Contig10849:11..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 42/89 (47.19%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNSDIVE 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 42/89 (47.19%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNSDIVE 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 42/89 (47.19%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNSDIVE 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 42/89 (47.19%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNSDIVE 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 42/89 (47.19%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L++Y   +Y  P  + +  + +E
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKY--TEYNEPHESRTNSDIVE 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15
Identity = 41/89 (46.07%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M + L++Y   +Y  P  + +  + LE
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKY--TEYSEPHESRTNTDILE 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.517e-14
Identity = 40/89 (44.94%), Postives = 65/89 (73.03%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALE 278
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ +SS M + L++Y   +Y  P  + +  + L+
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKY--TEYSEPHESRTNADILQ 86          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: SRFA_DICDI (Serum response factor homolog A OS=Dictyostelium discoideum GN=srfA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 49/194 (25.26%), Postives = 93/194 (47.94%), Query Frame = 3
Query:    3 GKKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMV-------KTLVRYQKCDYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL 563
            GKK GR +++++ I++K  R +TF+KR+ G++KKAYELS L   +V L++ S  G +Y F ++           K L+  Q C      PN S   A + S+    L  + + + LQ+ Q+    ++      ++ +  ++Q   + + ++  + Q         Q + QL  +  +  +Q+  +  Q    QL
Sbjct:   64 GKKAGRRKIKIEFIDDKSRRHITFSKRKAGIMKKAYELSTLTGTQVLLLVASETGHVYTFATAKLQPLITRPEGKNLI--QSCLNTPDNPN-SPSMANQNSNNNSNLLQQQQQQQLQQQQQLQQQQQQQQQQQQQQQQQQQQQQAAQQAVQQQQQQQAAQQQAAQQQQLQLQQQQQQQQQQQQQQQQQQQQQQL 254          
BLAST of CK934433 vs. ExPASy Swiss-Prot
Match: PVG4_SCHPO (MADS-box transcription factor pvg4 OS=Schizosaccharomyces pombe GN=pvg4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 45/136 (33.09%), Postives = 67/136 (49.26%), Query Frame = 3
Query:   12 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLVRYQKCDYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMS 419
            MGR ++ +  I +  +R VTF KR+ GL KKAYEL+VL D EVA+ +   +G+L+ FCSS             DY      ++     EL ++  +       E+   S     G    PLN+K L+S ++ L  S
Sbjct:    1 MGRKKISIAPITDDRSRSVTFVKRKQGLYKKAYELAVLADCEVAVTVIDRKGRLHVFCSS-------------DYQRTLQQLNTLSIYELKNRSHFSSSPVE-ESSTVSPETTTG-SFTPLNNKHLKSQDQPLSDS 121          
The following BLAST results are available for this feature:
BLAST of CK934433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MEF2C_BOVIN2.973e-1547.19Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA2.973e-1547.19Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB2.973e-1547.19Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE2.973e-1547.19Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK2.973e-1547.19Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2B_HUMAN6.624e-1546.07Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE2.517e-1444.94Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
SRFA_DICDI4.443e-1125.26Serum response factor homolog A OS=Dictyostelium d... [more]
PVG4_SCHPO9.898e-1133.09MADS-box transcription factor pvg4 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_B02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934433 ID=CK934433; Name=CK934433; organism=Citrus sinensis; type=EST; length=908bp
GGGGGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAAC
AAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAA
GAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCA
TTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATG
GTCAAAACGCTTGTGAGGTACCAGAAGTGCGACTATGGAGCACCAGAACC
GAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATC
TGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTC
CTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGA
AAGGCAGCTTGATATGTCATTGAAGCAGATTAGATCAACAAGAACTCAGT
ACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGC
GAAGCAAATAAGACCCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAA
CACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAAC
CAGCTCAACCTCAGGGCGATAGCTTCTTTCACGCCTTGGAATGTGAACCC
ACATTGCAAATTGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGC
AGGCCCGAGTCTGAATAATTACATGCAAGGATGGCTACCATGCTAAGAGA
GCGGCGGGCATTACCAGTCAATGTATTGTAGTTGATCCATAAGAATCAGC
AACTTTGTATCCCTTTGTAAGCAACCCTATTCAGTGGCTAGGAAACACGC
ATCATAAGGATTTATTATAATAACTCTANAGTGATCCTGCACTTTAGGGA
AACTGATG
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