CK934442

Overview
NameCK934442
Unique NameCK934442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6234 contig Csv1_Contig6234:63..595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934442 vs. ExPASy Swiss-Prot
Match: ACBD6_MOUSE (Acyl-CoA-binding domain-containing protein 6 OS=Mus musculus GN=Acbd6 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.866e-11
Identity = 33/85 (38.82%), Postives = 47/85 (55.29%), Query Frame = 2 
Query:   35 KGEMGLQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 289
            +G   L E FE+ A   + L +  + E  L LY  +KQ  VG  NT +P  F+   + KW+AWKA+   S  +AM +YI  VK+L
Sbjct:   37 EGTRSLAELFEKAAAHVQGLVQVASREQLLYLYARFKQVKVGNCNTPKPNFFDFEGKQKWEAWKALGDSSPSQAMQEYIAAVKKL 121
[Close]
BLAST of CK934442 vs. ExPASy Swiss-Prot
Match: ACBD5_PONAB (Acyl-CoA-binding domain-containing protein 5 OS=Pongo abelii GN=ACBD5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.866e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 2 
Query:   53 QEEFEEHAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQE 295
            +  FE   +  ++LP++     TNE  L  Y  YKQAT GP   +RPG ++   R KWDAW ++   +KEEAMS Y+ ++K++ E
Sbjct:   44 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMSAYVEEMKKIIE 128
The following BLAST results are available for this feature:
BLAST of CK934442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ACBD6_MOUSE4.866e-1138.82Acyl-CoA-binding domain-containing protein 6 OS=Mu... [more]
ACBD5_PONAB4.866e-1140.00Acyl-CoA-binding domain-containing protein 5 OS=Po... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004259_A06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934442 ID=CK934442; Name=CK934442; organism=Citrus sinensis; type=EST; length=533bp
GGGGAATTCNNNAATCTCAGAGAAAAACAAAAGAAAGGGGGAAATGGGTT
TGCAGGAGGAATTTGAGGAGCATGCTGAGAAAGCAAAGACCCTGCCAGAG
TCGACAACAAACGAAAACAAGCTTATCCTTTATGGTCTCTACAAGCAAGC
CACTGTTGGACCAGTAAACACAAACAGACCTGGAATGTTTAACATGAGGG
ACAGAGCTAAGTGGGATGCATGGAAGGCTGTCGAAGGGAAATCTAAGGAG
GAAGCAATGAGTGACTACATTACCAAGGTAAAGCAGTTGCAGGAGGAAGC
TGGTGTTTCTGCCTGACCTTCCGCTGTATGCTTATCTTCCAAATCTCATG
ATTCGGAGAAGTCAAAATAAGTTGAAAAAGGTTTAAGCTGTTTGCAAACT
GGTTCTATTGATGTTACATCTGAATTATGTCTCTGTTTAAATTATGTATG
ATATGTACTTTGGTTAAAGTCCATTGAAATGATTAAGTAGTTTGCGTTAT
CTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top