CK934466

Overview
NameCK934466
Unique NameCK934466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.803e-32
Identity = 68/157 (43.31%), Postives = 100/157 (63.69%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 738
            K+V++GDS VGKS ++ RF R +F   +K T+G  F +++I + D+ T+  + WDTAGQER+ A+   YYRG       YDITS  SF     W+ EL++    DI++ +VGNK+DL   REVP ++   +AE N + F+ETSA  + N+NQ FE +
Sbjct:   12 KIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEI-DNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERL 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.803e-32
Identity = 65/159 (40.88%), Postives = 102/159 (64.15%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 744
            KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +T+ L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D++EKR+V  + G + A   G+ F+ETSAK++ N+ + F  +A+
Sbjct:   10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLAR 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.803e-32
Identity = 65/159 (40.88%), Postives = 102/159 (64.15%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 744
            KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++KR+V  + G + A   G+ F+ETSAK++ N+ + F  +A+
Sbjct:   10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLAR 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.803e-32
Identity = 65/159 (40.88%), Postives = 102/159 (64.15%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 744
            KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++KR+V  + G + A   G+ F+ETSAK++ N+ + F  +A+
Sbjct:   10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLAR 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.803e-32
Identity = 65/159 (40.88%), Postives = 102/159 (64.15%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 744
            KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++KR+V  + G + A   G+ F+ETSAK++ N+ + F  +A+
Sbjct:   10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLAR 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.803e-32
Identity = 72/176 (40.91%), Postives = 113/176 (64.20%), Query Frame = 1
Query:  238 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPS 762
            G+ D  ++  K++L+GDSGVGK+C+++RF  G F   + + TVG  F ++ + + D   VK +IWDTAGQER+ ++   YYR        YDIT+ DSF+  Q W+ E+Q++   D+V+ L+GNK D  ++R V  +DG + A++ G+ F+ETSAK+  N++  F  IAK L + S
Sbjct:   56 GTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRS 230          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 7.579e-32
Identity = 65/159 (40.88%), Postives = 102/159 (64.15%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 744
            KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++KR+V  + G + A   G+ F+ETSAK++ N+ + F  +A+
Sbjct:   10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLAR 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.579e-32
Identity = 61/158 (38.61%), Postives = 104/158 (65.82%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 741
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D+  +K +IWDTAGQE + ++   YYRG       YDIT  ++FN    W+++ ++H + ++ + LVGNK DL  +R V  ++G ++A+++G+ F+E SAKTA N+ + F + A
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTA 164          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 7.579e-32
Identity = 69/163 (42.33%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 756
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YD+T   SFN  + W++E+Q++    +   LVGNK DL EK+ V      EYA+  G+ F+ETSAK++ N+ Q F  +A  + +
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINL-DGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKK 171          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 7.579e-32
Identity = 72/165 (43.64%), Postives = 100/165 (60.61%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 750
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER+  +   YYRG       YD+T   SFN  + W++E+ ++ S ++   LVGNK DL  K+ V      E+A+  G+ F+ETSAK A N+ Q F     EI KR+
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 176          
The following BLAST results are available for this feature:
BLAST of CK934466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_DICDI5.803e-3243.31Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB8_DISOM5.803e-3240.88Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8B_RAT5.803e-3240.88Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB5.803e-3240.88Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE5.803e-3240.88Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB26_RAT5.803e-3240.91Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB8B_HUMAN7.579e-3240.88Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB2B_MAIZE7.579e-3238.61Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB1B_DICDI7.579e-3242.33Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB1A_PIG7.579e-3243.64Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934466 ID=CK934466; Name=CK934466; organism=Citrus sinensis; type=EST; length=892bp
GGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAATC
AGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAATT
ACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATATTT
ATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGTTC
TGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGATG
CAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTGGG
AAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACCTC
CAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCAAG
ATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAAGA
TATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTTGT
TGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTGGG
TTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAGTT
GGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGATGG
CATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGCCA
AGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGACTT
CCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTGCT
GTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGATT
TGTGTATATTGTGATATATGATGTGGNNNNNTGTTTCATTTT
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