CK934472

Overview
NameCK934472
Unique NameCK934472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.881e-20
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPV 250

HSP 2 Score: 46.595 bits (109), Expect = 4.881e-20
Identity = 39/105 (37.14%), Postives = 53/105 (50.48%), Query Frame = 2 
Query:   44 RFRECELIHGRWAMLATLGALTVEWLT--GIT-----WQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            R RE E+IH RWAML  LG +  E L+  G+T     W  AG     EG   YLG P      ++  IW  +V+++G++E  R         LD   ++YPGG F
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF 194
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.349e-20
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253

HSP 2 Score: 41.2022 bits (95), Expect = 6.349e-20
Identity = 33/103 (32.04%), Postives = 48/103 (46.60%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWLT--------GITWQDAGKVELVEGSSYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L          + ++   ++    G  YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF 196
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.248e-20
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DP+  A +++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  207 FDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264

HSP 2 Score: 44.2838 bits (103), Expect = 8.248e-20
Identity = 38/103 (36.89%), Postives = 48/103 (46.60%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G IE  R          DP   +YPGG F
Sbjct:  108 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF 207
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.257e-20
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N + H++DP+
Sbjct:  194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPV 250

HSP 2 Score: 44.2838 bits (103), Expect = 8.257e-20
Identity = 38/105 (36.19%), Postives = 52/105 (49.52%), Query Frame = 2 
Query:   44 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW  +V+++G++E  R         LD   ++YPGG F
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF 194
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.257e-20
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE    L++ E+K  RLAM++  GF VQA+VTGKGPL N A H++DP++
Sbjct:  194 FDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVN 251

HSP 2 Score: 44.2838 bits (103), Expect = 8.257e-20
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF 194
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.257e-20
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            FDPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:  194 FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPV 250

HSP 2 Score: 45.8246 bits (107), Expect = 8.257e-20
Identity = 38/103 (36.89%), Postives = 51/103 (49.51%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW  +V+++G++E  R         LDP   +YPGG F
Sbjct:   95 RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDP---IYPGGAF 194
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.260e-20
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+ P++
Sbjct:  192 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVN 249

HSP 2 Score: 44.669 bits (104), Expect = 8.260e-20
Identity = 37/103 (35.92%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R          DP   +YPGG F
Sbjct:   93 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF 192
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.083e-19
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  135 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 192

HSP 2 Score: 41.5874 bits (96), Expect = 1.083e-19
Identity = 36/103 (34.95%), Postives = 48/103 (46.60%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH  WAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R          DP   +YPGG F
Sbjct:   36 RELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF 135
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.817e-19
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  195 FDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252

HSP 2 Score: 39.6614 bits (91), Expect = 1.817e-19
Identity = 35/103 (33.98%), Postives = 47/103 (45.63%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            R+ E+IH RW ML  LG +  E     G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   96 RKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF 195
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.817e-19
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ E K+ RLAM +  GF +QA+VTGKGPL N A HL DP++
Sbjct:  196 FDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVN 253

HSP 2 Score: 43.1282 bits (100), Expect = 1.817e-19
Identity = 38/103 (36.89%), Postives = 48/103 (46.60%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E     G+      W  AG     EG   YLG P      ++  IW  +VL++G +E  R         +DP   LYPGG F
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDP---LYPGGSF 196
The following BLAST results are available for this feature:
BLAST of CK934472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB26_PETSP4.881e-2059.65Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_NICPL6.349e-2063.79Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB2A_PYRPY8.248e-2058.62Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_SOLLC8.257e-2059.65Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_MAIZE8.257e-2058.62Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI8.257e-2059.65Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_SOYBN8.260e-2060.34Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_CUCSA1.083e-1962.07Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_PETSP1.817e-1963.79Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_PETSP1.817e-1960.34Chlorophyll a-b binding protein 22L, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934472 ID=CK934472; Name=CK934472; organism=Citrus sinensis; type=EST; length=671bp
GGGCACGCCGCTTCAGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCC
GTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACTCTCGGT
GCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAA
GGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCT
CAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAG
TTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCCGGGAGG
AAAGTTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCC
ACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATT
CCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACA
ACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACC
TTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACT
ATTGTTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTTATAACGT
TTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTAAAGCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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