CK934481

Overview
NameCK934481
Unique NameCK934481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 43/127 (33.86%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664
            ++++GN+P +ID++ L ++ Q+ G VE AEVIY++ T RSR F FV M TVE+A+  +E  +  ++ GR + VN       + + +             Y++YVGN+   +    L++ FSE G+V+
Sbjct:   98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERA------PRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVV 218          

HSP 2 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 517
            R+Y+GNIP +ID+  L ++  EHG V  A V++D+ +GRSR F FV M +  + +  I  L+G  + GR I+VN  E+
Sbjct:  192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269          
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 520
            ++++GN+  N+D+ +L ++ +  G VE  EVIYDK TGRSR F FV M T  +  A  ++ NG E  GR ++VN    P
Sbjct:  100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178          
The following BLAST results are available for this feature:
BLAST of CK934481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ROC3_NICSY1.133e-1433.8628 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_ARATH1.809e-1241.7729 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_F06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934481 ID=CK934481; Name=CK934481; organism=Citrus sinensis; type=EST; length=666bp
CGGGCCGGGGNNNNCCAAACGACTCAAATCAACGGCAATGACTTCATTAT
CATCATCATCATCTCTAATACTGTCTCAACAAAATCTCATTTTTTAAAAA
ACCCACTTCACATTTCAATCAAGACAACCAATTCTTCAAATCAGATTTCC
AAAACTCTCATATTCTTTGCACAATCTCAAGACAGCAAGCACCGAAGAAT
CCACTACGAGACTCTTTGCAGTAGCTGAAGAAACTACATCATCATCATCA
TCATCGGTTGACACGTCTTCAGAGTTTGCTAGGAGGGTCTATATTGGTAA
CATTCCTAGAAATATTGATAATGATGAACTTACAAAGATTGTTCAAGAAC
ACGGCGCCGTCGAGAAAGCTGAGGTTATTTATGATAAGTACACTGGAAGG
AGTCGCCGATTTGCCTTTGTTATGATGAAAACTGTTGAGGATGCAAATGC
AGTGATTGAGAAACTGAACGGCACTGAAATTGGTGGACGTGAGATCAAAG
TAAACATCACAGAGAAACCTTTGGTGCAAGTTGATTTGTCCCTCCTCCAG
GCAGAGGATTCTAACTTTGTGGACAGTCCGTATAAAGTTTATGTAGGAAA
TCTTGCAAAGACAGTGACCTCGGAAATGCTCAAAAAGTGTTTCTCTGAGA
AGGGACAGGTTCTTAG
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