CK934491
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_ORITI (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28 Identity = 61/121 (50.41%), Postives = 88/121 (72.73%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ V +P NKR+ L YI+G+GR+ A++I ++++ NK KD+S +EL+ +R + SKY +EGDLRR L I++ K+I+CY G+RHI+ LP RGQ+T +N RT KGK +AIAGKKK Sbjct: 2 ARISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKK 122
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_ONYPE (30S ribosomal protein S13 OS=Onion yellows phytoplasma GN=rpsM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28 Identity = 60/120 (50.00%), Postives = 88/120 (73.33%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ G++IP++KR+ +L YI+G+G + +IL +L ++ I K+++E++L +R E++KY +EGDLRR L I+RL EI YRG+RH +GLP RGQ T+NN T+KGK AIAGKKK Sbjct: 2 ARIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELNIDQNIRVKNLTEQQLSALRSEITKYNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAIAGKKK 121
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_GRABC (30S ribosomal protein S13 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsM PE=3 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28 Identity = 61/124 (49.19%), Postives = 88/124 (70.97%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK-YMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579 AR+ GV IP NKR+ SL+YI+G+G +A++I +L + + + +S++E++ IR+ + + Y +EGDLRR A+ I+RL ++ CYRG+RH +GLP RGQ T N RT KGK VAIAGKKK R Sbjct: 2 ARIAGVNIPTNKRVAISLRYIYGIGPAQAQKICTELSIPDERRVNQLSDDEILRIRELIDREYRVEGDLRREVAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKKVTR 125
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_BACSU (30S ribosomal protein S13 OS=Bacillus subtilis GN=rpsM PE=1 SV=3) HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28 Identity = 65/120 (54.17%), Postives = 86/120 (71.67%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ GV+IP +KR+ SL YI G+GRT A+Q+L + + E+ +D++EEEL IRD + K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ++KNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_BACP2 (30S ribosomal protein S13 OS=Bacillus pumilus (strain SAFR-032) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28 Identity = 64/120 (53.33%), Postives = 86/120 (71.67%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ GV+IP +KR+ SL Y+ G+GRT A+Q+L + + E+ +D++E+EL IRD + K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAQQVLKEAGVSEDTRVRDLTEDELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_BACA2 (30S ribosomal protein S13 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28 Identity = 64/120 (53.33%), Postives = 86/120 (71.67%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ GV+IP +KR+ SL Y+ G+GRT A+Q+L + + E+ +D++EEEL IRD + K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ++KNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDVIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_ACIF5 (30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28 Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555 AR+ GV IPNNK+IE +L YI+G+GRTRAR +L D+ + ++ KD+SE EL IR EV+K+++EGDLRR + I+RL ++ CYRGIRH +GLP GQ TK N RT KG +I Sbjct: 2 ARIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRV-KDISEPELERIRSEVAKFLVEGDLRREVTMNIKRLMDLGCYRGIRHRRGLPVHGQRTKTNARTRKGPAKSI 116
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_ACIF2 (30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28 Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555 AR+ GV IPNNK+IE +L YI+G+GRTRAR +L D+ + ++ KD+SE EL IR EV+K+++EGDLRR + I+RL ++ CYRGIRH +GLP GQ TK N RT KG +I Sbjct: 2 ARIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRV-KDISEPELERIRSEVAKFLVEGDLRREVTMNIKRLMDLGCYRGIRHRRGLPVHGQRTKTNARTRKGPAKSI 116
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_PHYAS (30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28 Identity = 59/120 (49.17%), Postives = 91/120 (75.83%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ G++IP++KR+ +L YI+G+G+ +++IL +L + + I K+++E++L ++R E++KY +EGDLRR L I+RL EI YRG+RH +GLP RGQ T+NN T+KGK +IAGKKK Sbjct: 2 ARIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITKYSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_NEIMF (30S ribosomal protein S13 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28 Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 567 AR+ GV IPNN I LQ I+G+G TRA+ I ++ + K KD+ E +L +RD+V+KY +EGDLRR ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK Sbjct: 2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120 The following BLAST results are available for this feature:
BLAST of CK934491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK934491 ID=CK934491; Name=CK934491; organism=Citrus sinensis; type=EST; length=716bpback to top |