CK934491

Overview
NameCK934491
Unique NameCK934491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13225 contig Csv1_Contig13225:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_NEIMB (30S ribosomal protein S13 OS=Neisseria meningitidis serogroup B GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 567
            AR+ GV IPNN  I   LQ I+G+G TRA+ I    ++  + K  KD+ E +L  +RD+V+KY +EGDLRR   ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct:    2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_NEIMA (30S ribosomal protein S13 OS=Neisseria meningitidis serogroup A GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 567
            AR+ GV IPNN  I   LQ I+G+G TRA+ I    ++  + K  KD+ E +L  +RD+V+KY +EGDLRR   ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct:    2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_NEIM0 (30S ribosomal protein S13 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 567
            AR+ GV IPNN  I   LQ I+G+G TRA+ I    ++  + K  KD+ E +L  +RD+V+KY +EGDLRR   ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct:    2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_NEIG1 (30S ribosomal protein S13 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 567
            AR+ GV IPNN  I   LQ I+G+G TRA+ I    ++  + K  KD+ E +L  +RD+V+KY +EGDLRR   ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct:    2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_MESFL (30S ribosomal protein S13 OS=Mesoplasma florum GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 59/120 (49.17%), Postives = 86/120 (71.67%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GVEIPN KR+  SL YI+G+G + ++++L  L +   + T+D++EE++  I  E+S + +EG+LRR  +L I+RL EI CYRG+RH +GLP RGQ +K N RT+KG R  +A KKK
Sbjct:    2 ARISGVEIPNEKRVVISLTYIYGIGLSTSQKVLSKLNISEDVRTRDLTEEQIKAISTEISNFKVEGELRREVSLNIKRLMEIGCYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKKK 121
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_GEOTN (30S ribosomal protein S13 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IP +KR+  SL YI+G+G+  A++IL +  + E+   +D++EEEL  IR+ V +  +EGDLRR  +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIYGIGKPTAQKILKEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_GEOLS (30S ribosomal protein S13 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 60/121 (49.59%), Postives = 86/121 (71.07%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKD-MSEEELITIRDEVSKYM-IEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ G+++P NKRIE +L YI+G+GRT A+ ILV   ++     D ++E E+  +R+E+ K + +EGDLRR  ++ I+RL ++ CYRG+RH +GLPCRGQ TK N RT KG    +AGKKK
Sbjct:    2 ARIAGIDLPKNKRIEIALTYIYGIGRTTAKNILVATSIDGSTRTDKLTEAEIGKLREEIDKNVKVEGDLRREVSMNIKRLMDLGCYRGLRHRKGLPCRGQRTKTNARTRKGPARTVAGKKK 122
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_GEOKA (30S ribosomal protein S13 OS=Geobacillus kaustophilus GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IP +KR+  SL YI+G+G+  A++IL +  + E+   +D++EEEL  IR+ V +  +EGDLRR  +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGVDIPRDKRVVISLTYIYGIGKPTAQKILKEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_BIFLO (30S ribosomal protein S13 OS=Bifidobacterium longum GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579
            AR+ GV+IPN KRIE +L YI GVGRTRA++ L    +   I  KD+++E+LIT+RD + + Y IEGDLRR     IRR  +I CY+G RH +GLP RGQ TK N RT KG +  +AGKKKA +
Sbjct:    2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREVDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_BIFLI (30S ribosomal protein S13 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579
            AR+ GV+IPN KRIE +L YI GVGRTRA++ L    +   I  KD+++E+LIT+RD + + Y IEGDLRR     IRR  +I CY+G RH +GLP RGQ TK N RT KG +  +AGKKKA +
Sbjct:    2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125
The following BLAST results are available for this feature:
BLAST of CK934491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_NEIMB7.825e-2852.5030S ribosomal protein S13 OS=Neisseria meningitidi... [more]
RS13_NEIMA7.825e-2852.5030S ribosomal protein S13 OS=Neisseria meningitidi... [more]
RS13_NEIM07.825e-2852.5030S ribosomal protein S13 OS=Neisseria meningitidi... [more]
RS13_NEIG17.825e-2852.5030S ribosomal protein S13 OS=Neisseria gonorrhoeae... [more]
RS13_MESFL7.825e-2849.1730S ribosomal protein S13 OS=Mesoplasma florum GN=... [more]
RS13_GEOTN7.825e-2852.5030S ribosomal protein S13 OS=Geobacillus thermoden... [more]
RS13_GEOLS7.825e-2849.5930S ribosomal protein S13 OS=Geobacter lovleyi (st... [more]
RS13_GEOKA7.825e-2852.5030S ribosomal protein S13 OS=Geobacillus kaustophi... [more]
RS13_BIFLO7.825e-2854.0330S ribosomal protein S13 OS=Bifidobacterium longu... [more]
RS13_BIFLI7.825e-2854.0330S ribosomal protein S13 OS=Bifidobacterium longu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934491 ID=CK934491; Name=CK934491; organism=Citrus sinensis; type=EST; length=716bp
GGGGCACTCGAGCTTGCTGTTAGTCACCATTCCGTTTGGTTTCCGAGAAA
ACAAAAGAAACCAAAAGAGAAAATGGTACAAACACTTGCAATGCCTGTCG
CTCCGGCGCTCTCCGTTATCTGCAACGGACATAACAATAATCTTCTCACC
AACGCTTCCCTGTCTTTCCCTGTTTCCAAGCAGCCTCAGTATCCCGGTCT
GAGCATTCAATGTGCTCGTGTTGGAGGTGTCGAGATTCCAAATAACAAGC
GGATTGAGTACTCGCTTCAGTATATTCATGGAGTTGGGCGCACAAGAGCT
CGCCAAATCCTCGTTGATCTCAAAATGGAGAACAAAATCACCAAAGACAT
GTCTGAGGAAGAGCTCATTACAATTCGTGACGAAGTCTCCAAATACATGA
TTGAAGGAGATTTGAGGCGGTTCAGTGCACTTGCTATTAGGAGATTGAAG
GAGATTCAATGCTACCGCGGAATTCGCCATATTCAGGGCTTGCCATGTAG
AGGGCAGCACACAAAGAACAATTGTCGCACATTGAAGGGTAAGAGGGTTG
CTATTGCTGGGAAAAAGAAAGCCCCTCGTTAATTAAATGACTTTTTTCCT
GTTTATTTAATGGATAGGGTTGATTTTCTATTGTATTGAATTTGAATGTG
AATCATTTTGACTACAAGCTTGGTTGCTTTCGATCCAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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