CK934491
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_NEIMB (30S ribosomal protein S13 OS=Neisseria meningitidis serogroup B GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28 Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 567 AR+ GV IPNN I LQ I+G+G TRA+ I ++ + K KD+ E +L +RD+V+KY +EGDLRR ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK Sbjct: 2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_NEIMA (30S ribosomal protein S13 OS=Neisseria meningitidis serogroup A GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28 Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 567 AR+ GV IPNN I LQ I+G+G TRA+ I ++ + K KD+ E +L +RD+V+KY +EGDLRR ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK Sbjct: 2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_NEIM0 (30S ribosomal protein S13 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28 Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 567 AR+ GV IPNN I LQ I+G+G TRA+ I ++ + K KD+ E +L +RD+V+KY +EGDLRR ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK Sbjct: 2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_NEIG1 (30S ribosomal protein S13 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28 Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 567 AR+ GV IPNN I LQ I+G+G TRA+ I ++ + K KD+ E +L +RD+V+KY +EGDLRR ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK Sbjct: 2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_MESFL (30S ribosomal protein S13 OS=Mesoplasma florum GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28 Identity = 59/120 (49.17%), Postives = 86/120 (71.67%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ GVEIPN KR+ SL YI+G+G + ++++L L + + T+D++EE++ I E+S + +EG+LRR +L I+RL EI CYRG+RH +GLP RGQ +K N RT+KG R +A KKK Sbjct: 2 ARISGVEIPNEKRVVISLTYIYGIGLSTSQKVLSKLNISEDVRTRDLTEEQIKAISTEISNFKVEGELRREVSLNIKRLMEIGCYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKKK 121
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_GEOTN (30S ribosomal protein S13 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28 Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ GV+IP +KR+ SL YI+G+G+ A++IL + + E+ +D++EEEL IR+ V + +EGDLRR +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIYGIGKPTAQKILKEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_GEOLS (30S ribosomal protein S13 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28 Identity = 60/121 (49.59%), Postives = 86/121 (71.07%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKD-MSEEELITIRDEVSKYM-IEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ G+++P NKRIE +L YI+G+GRT A+ ILV ++ D ++E E+ +R+E+ K + +EGDLRR ++ I+RL ++ CYRG+RH +GLPCRGQ TK N RT KG +AGKKK Sbjct: 2 ARIAGIDLPKNKRIEIALTYIYGIGRTTAKNILVATSIDGSTRTDKLTEAEIGKLREEIDKNVKVEGDLRREVSMNIKRLMDLGCYRGLRHRKGLPCRGQRTKTNARTRKGPARTVAGKKK 122
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_GEOKA (30S ribosomal protein S13 OS=Geobacillus kaustophilus GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28 Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ GV+IP +KR+ SL YI+G+G+ A++IL + + E+ +D++EEEL IR+ V + +EGDLRR +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIYGIGKPTAQKILKEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_BIFLO (30S ribosomal protein S13 OS=Bifidobacterium longum GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28 Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579 AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD + + Y IEGDLRR IRR +I CY+G RH +GLP RGQ TK N RT KG + +AGKKKA + Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREVDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_BIFLI (30S ribosomal protein S13 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28 Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579 AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD + + Y IEGDLRR IRR +I CY+G RH +GLP RGQ TK N RT KG + +AGKKKA + Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125 The following BLAST results are available for this feature:
BLAST of CK934491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934491 ID=CK934491; Name=CK934491; organism=Citrus sinensis; type=EST; length=716bpback to top |