CK934491

Overview
NameCK934491
Unique NameCK934491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13225 contig Csv1_Contig13225:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_BIFLD (30S ribosomal protein S13 OS=Bifidobacterium longum (strain DJO10A) GN=rpsM PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579
            AR+ GV+IPN KRIE +L YI GVGRTRA++ L    +   I  KD+++E+LIT+RD + + Y IEGDLRR     IRR  +I CY+G RH +GLP RGQ TK N RT KG +  +AGKKKA +
Sbjct:    2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLEANYKIEGDLRREVDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_SYNP2 (30S ribosomal protein S13 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsM PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 59/124 (47.58%), Postives = 90/124 (72.58%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS-KYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579
            AR+ GV++P +KRIE +L Y++G+G +RA++I+ +  +  +   +D+S+E+ + +R  V+  Y +EGDLRR  ++ I+RL +I  YRG RH QGLP RGQ T+ N RT +G+RV +AGKKKAPR
Sbjct:    2 ARIAGVDLPRDKRIEIALTYVYGIGLSRAQEIIANTGVNPDTRVRDLSDEDALKLRSYVTDNYQVEGDLRRLESMNIKRLVDIGTYRGRRHRQGLPVRGQRTRTNARTRRGRRVTVAGKKKAPR 125          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_FLAJ1 (30S ribosomal protein S13 OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rpsM PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579
            AR+ GV+IP NKR   +L YI G+G++RA +IL   ++ ++K  +D +++E+  IRD VS Y IEG+LR   +L I+RL +I CYRGIRH  GLP RGQ TKNN RT KGKR  +A KKKA +
Sbjct:    2 ARIAGVDIPKNKRGVIALTYIFGLGKSRAIEILEKAQVSQDKKVQDWNDDEIGAIRDAVSFYKIEGELRSEVSLNIKRLMDIGCYRGIRHRSGLPLRGQRTKNNSRTRKGKRKTVANKKKATK 124          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_BIFAA (30S ribosomal protein S13 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rpsM PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 67/124 (54.03%), Postives = 85/124 (68.55%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS-KYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579
            AR+ GV+IPN KRIE +L YI GVGRTRA++ L    +   I  KD+++E+LIT+RD +   Y IEGDLRR     IRR  +I CY+G RH +GLP RGQ TK N RT KG +  +AGKKKA +
Sbjct:    2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGINPDIRVKDLTDEQLITLRDYLEGNYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK 125          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_RHOPB (30S ribosomal protein S13 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsM PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.335e-27
Identity = 60/121 (49.59%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK-YMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV IP NKR+  +LQYIHG+G+  A +IL  +K+ ++K    +S++E++ IR+ + + YM+EGDLRR + + I+RL ++ CYRG+RH +GLP RGQ T  N RT KG   +IAGKKK
Sbjct:    2 ARIAGVNIPTNKRVLIALQYIHGIGQKNAAEILEKVKIADDKRVNQLSDQEVLQIREVIDRDYMVEGDLRRETGMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKSIAGKKK 122          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_ORITB (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Boryong) GN=rpsM PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.335e-27
Identity = 60/121 (49.59%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            +R+  V +P NKR+   L YI+G+GR+ A++I  ++++  NK  KD+S +EL+ +R  + SKY +EGDLRR   L I++ K+I+CY G+RHI+ LP RGQ+T +N RT KGK +AIAGKKK
Sbjct:    2 SRISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKK 122          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_MYCCT (30S ribosomal protein S13 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rpsM PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.335e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GVEIPNNKR+  SL YI+G+G   A+ +L  L +   I  KD++EE++  I  E+SKY  EG+LRR  +L I+RL EI  YRG+RH +GLP RGQ +K N RT+KG R  +A KKK
Sbjct:    2 ARISGVEIPNNKRVVVSLTYIYGIGLPTAQSVLKTLNISEDIRVKDLTEEQIKNISIEISKYKTEGELRREVSLNIKRLMEIGSYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_LACF3 (30S ribosomal protein S13 OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=rpsM PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.335e-27
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV++P +KRI   L YI G+G T A++IL +  +   I  +D++ ++   IR EV +  +EGDLRR  +L I+RL+EI  YRG+RH  GLP RGQHTKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILANAGVSEDIRVRDLTPDQEEKIRAEVDQIKVEGDLRREVSLNIKRLQEIGSYRGMRHRHGLPVRGQHTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_LACBA (30S ribosomal protein S13 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpsM PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.335e-27
Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  217 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            R+ GV++P +KRI Y L YI G+G   A +I+ D  +   +  +D++ ++   +R EV KY +EGDLRR  +L I+ L+EI  YRG+RH +GLP RGQHTKNN RT KGK V+IAGKKK
Sbjct:    3 RIAGVDLPRDKRIAYGLTYIFGIGINTAHKIVADAGVPEDVRVRDLTPDQEDKVRAEVDKYKVEGDLRREVSLNIKNLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKAVSIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_FLAPJ (30S ribosomal protein S13 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rpsM PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.335e-27
Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579
            AR+ GV+IP NKR   +L YI GVGR+RA ++L   ++ ++K  +D +++E+  IR+ VS Y IEG+LR   +L I+RL +I CYRGIRH  GLP RGQ TKNN RT KGKR  +A KKKA +
Sbjct:    2 ARIAGVDIPKNKRGVIALTYIFGVGRSRAIEVLEKAQVSQDKKVQDWNDDEIGGIREAVSFYKIEGELRSEVSLNIKRLMDIGCYRGIRHRSGLPLRGQRTKNNSRTRKGKRKTVANKKKATK 124          
The following BLAST results are available for this feature:
BLAST of CK934491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_BIFLD7.825e-2854.0330S ribosomal protein S13 OS=Bifidobacterium longu... [more]
RS13_SYNP21.022e-2747.5830S ribosomal protein S13 OS=Synechococcus sp. (st... [more]
RS13_FLAJ11.022e-2752.8530S ribosomal protein S13 OS=Flavobacterium johnso... [more]
RS13_BIFAA1.022e-2754.0330S ribosomal protein S13 OS=Bifidobacterium adole... [more]
RS13_RHOPB1.335e-2749.5930S ribosomal protein S13 OS=Rhodopseudomonas palu... [more]
RS13_ORITB1.335e-2749.5930S ribosomal protein S13 OS=Orientia tsutsugamush... [more]
RS13_MYCCT1.335e-2752.5030S ribosomal protein S13 OS=Mycoplasma capricolum... [more]
RS13_LACF31.335e-2753.3330S ribosomal protein S13 OS=Lactobacillus ferment... [more]
RS13_LACBA1.335e-2751.2630S ribosomal protein S13 OS=Lactobacillus brevis ... [more]
RS13_FLAPJ1.335e-2752.8530S ribosomal protein S13 OS=Flavobacterium psychr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934491 ID=CK934491; Name=CK934491; organism=Citrus sinensis; type=EST; length=716bp
GGGGCACTCGAGCTTGCTGTTAGTCACCATTCCGTTTGGTTTCCGAGAAA
ACAAAAGAAACCAAAAGAGAAAATGGTACAAACACTTGCAATGCCTGTCG
CTCCGGCGCTCTCCGTTATCTGCAACGGACATAACAATAATCTTCTCACC
AACGCTTCCCTGTCTTTCCCTGTTTCCAAGCAGCCTCAGTATCCCGGTCT
GAGCATTCAATGTGCTCGTGTTGGAGGTGTCGAGATTCCAAATAACAAGC
GGATTGAGTACTCGCTTCAGTATATTCATGGAGTTGGGCGCACAAGAGCT
CGCCAAATCCTCGTTGATCTCAAAATGGAGAACAAAATCACCAAAGACAT
GTCTGAGGAAGAGCTCATTACAATTCGTGACGAAGTCTCCAAATACATGA
TTGAAGGAGATTTGAGGCGGTTCAGTGCACTTGCTATTAGGAGATTGAAG
GAGATTCAATGCTACCGCGGAATTCGCCATATTCAGGGCTTGCCATGTAG
AGGGCAGCACACAAAGAACAATTGTCGCACATTGAAGGGTAAGAGGGTTG
CTATTGCTGGGAAAAAGAAAGCCCCTCGTTAATTAAATGACTTTTTTCCT
GTTTATTTAATGGATAGGGTTGATTTTCTATTGTATTGAATTTGAATGTG
AATCATTTTGACTACAAGCTTGGTTGCTTTCGATCCAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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