CK934491

Overview
NameCK934491
Unique NameCK934491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_CORDI (30S ribosomal protein S13 OS=Corynebacterium diphtheriae GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 57/121 (47.11%), Postives = 83/121 (68.60%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV++P NKR+E +L YI+G+G  RA Q+L +  +   + T ++++E++  +RD + + + +EGDLRR     IRR  EI CY+G+RH +GLP RGQ TK N RT KG +  IAGKKK
Sbjct:    2 ARLAGVDLPRNKRMEVALTYIYGIGPARAAQLLEETGISPDLRTDNLTDEQVSALRDVIEATWKVEGDLRRQVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKKTIAGKKK 122
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_CLOBM (30S ribosomal protein S13 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYM-IEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ G+++P  KR+E  L YI+G+G   +++IL    +  + ++ KD+SEEE+  IRD V+K + +EGDLRR   L I+RL EI  YRGIRH + LP RGQ TK N RT KG + AI GKKK
Sbjct:    2 ARISGIDLPKEKRVEIGLTYIYGIGLPTSQEILEATGVNPDTRV-KDLSEEEVNAIRDYVNKNVKVEGDLRREIKLNIKRLVEIGSYRGIRHRRNLPVRGQKTKTNARTRKGPKRAIGGKKK 122
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_CLOBL (30S ribosomal protein S13 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYM-IEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ G+++P  KR+E  L YI+G+G   +++IL    +  + ++ KD+SEEE+  IRD V+K + +EGDLRR   L I+RL EI  YRGIRH + LP RGQ TK N RT KG + AI GKKK
Sbjct:    2 ARISGIDLPKEKRVEIGLTYIYGIGLPTSQEILKATGVNPDTRV-KDLSEEEVNAIRDYVNKNVKVEGDLRREIKLNIKRLVEIGSYRGIRHRRNLPVRGQKTKTNARTRKGPKRAIGGKKK 122
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_CLOBK (30S ribosomal protein S13 OS=Clostridium botulinum (strain Okra / Type B1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYM-IEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ G+++P  KR+E  L YI+G+G   +++IL    +  + ++ KD+SEEE+  IRD V+K + +EGDLRR   L I+RL EI  YRGIRH + LP RGQ TK N RT KG + AI GKKK
Sbjct:    2 ARISGIDLPKEKRVEIGLTYIYGIGLPTSQEILKATGVNPDTRV-KDLSEEEVNAIRDYVNKNVKVEGDLRREIKLNIKRLVEIGSYRGIRHRRNLPVRGQKTKTNARTRKGPKRAIGGKKK 122
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_CLOBJ (30S ribosomal protein S13 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYM-IEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ G+++P  KR+E  L YI+G+G   +++IL    +  + ++ KD+SEEE+  IRD V+K + +EGDLRR   L I+RL EI  YRGIRH + LP RGQ TK N RT KG + AI GKKK
Sbjct:    2 ARISGIDLPKEKRVEIGLTYIYGIGLPTSQEILKATGVNPDTRV-KDLSEEEVNAIRDYVNKNVKVEGDLRREIKLNIKRLVEIGSYRGIRHRRNLPVRGQKTKTNARTRKGPKRAIGGKKK 122
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_CLOBH (30S ribosomal protein S13 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYM-IEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ G+++P  KR+E  L YI+G+G   +++IL    +  + ++ KD+SEEE+  IRD V+K + +EGDLRR   L I+RL EI  YRGIRH + LP RGQ TK N RT KG + AI GKKK
Sbjct:    2 ARISGIDLPKEKRVEIGLTYIYGIGLPTSQEILKATGVNPDTRV-KDLSEEEVNAIRDYVNKNVKVEGDLRREIKLNIKRLVEIGSYRGIRHRRNLPVRGQKTKTNARTRKGPKRAIGGKKK 122
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_CLOB6 (30S ribosomal protein S13 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYM-IEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ G+++P  KR+E  L YI+G+G   +++IL    +  + ++ KD+SEEE+  IRD V+K + +EGDLRR   L I+RL EI  YRGIRH + LP RGQ TK N RT KG + AI GKKK
Sbjct:    2 ARISGIDLPKEKRVEIGLTYIYGIGLPTSQEILKATGVNPDTRV-KDLSEEEVNAIRDYVNKNVKVEGDLRREIKLNIKRLVEIGSYRGIRHRRNLPVRGQKTKTNARTRKGPKRAIGGKKK 122
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_CLOB1 (30S ribosomal protein S13 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYM-IEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ G+++P  KR+E  L YI+G+G   +++IL    +  + ++ KD+SEEE+  IRD V+K + +EGDLRR   L I+RL EI  YRGIRH + LP RGQ TK N RT KG + AI GKKK
Sbjct:    2 ARISGIDLPKEKRVEIGLTYIYGIGLPTSQEILKATGVNPDTRV-KDLSEEEVNAIRDYVNKNVKVEGDLRREIKLNIKRLVEIGSYRGIRHRRNLPVRGQKTKTNARTRKGPKRAIGGKKK 122
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_AGRVS (30S ribosomal protein S13 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 57/122 (46.72%), Postives = 84/122 (68.85%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSK-YMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV IP  KR+  +L YIHG+G   A++I+  V L  + ++ + +++ E++ IR+ + + Y +EGDLRR +A+ I+RL ++ CYRG+RH +GLP RGQ T  N RT KG   AIAGKKK
Sbjct:    2 ARIAGVNIPTAKRVVIALTYIHGIGPKFAQEIMEKVGLSADRRVHQ-LTDAEVLAIRETIDRDYQVEGDLRRDTAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_PROM9 (30S ribosomal protein S13 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24
Identity = 51/120 (42.50%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ G++IP  KR+E +L Y++G+G TR++ IL +  +   I  KD+S+ ++  +R    ++ +EGDLRR   +A++RL++I C RG RH   LP RGQ T+ N RT +G R  +AG+KK
Sbjct:    2 ARIAGIDIPREKRVEIALTYVYGIGLTRSKLILANAGVNPDIRVKDLSDSDVQKLRGATEEFTLEGDLRRKEGMALKRLQDIGCVRGRRHRMSLPVRGQRTRTNARTRRGSRKTVAGRKK 121
The following BLAST results are available for this feature:
BLAST of CK934491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_CORDI5.248e-2447.1130S ribosomal protein S13 OS=Corynebacterium dipht... [more]
RS13_CLOBM5.248e-2450.0030S ribosomal protein S13 OS=Clostridium botulinum... [more]
RS13_CLOBL5.248e-2450.0030S ribosomal protein S13 OS=Clostridium botulinum... [more]
RS13_CLOBK5.248e-2450.0030S ribosomal protein S13 OS=Clostridium botulinum... [more]
RS13_CLOBJ5.248e-2450.0030S ribosomal protein S13 OS=Clostridium botulinum... [more]
RS13_CLOBH5.248e-2450.0030S ribosomal protein S13 OS=Clostridium botulinum... [more]
RS13_CLOB65.248e-2450.0030S ribosomal protein S13 OS=Clostridium botulinum... [more]
RS13_CLOB15.248e-2450.0030S ribosomal protein S13 OS=Clostridium botulinum... [more]
RS13_AGRVS5.248e-2446.7230S ribosomal protein S13 OS=Agrobacterium vitis (... [more]
RS13_PROM96.855e-2442.5030S ribosomal protein S13 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934491 ID=CK934491; Name=CK934491; organism=Citrus sinensis; type=EST; length=716bp
GGGGCACTCGAGCTTGCTGTTAGTCACCATTCCGTTTGGTTTCCGAGAAA
ACAAAAGAAACCAAAAGAGAAAATGGTACAAACACTTGCAATGCCTGTCG
CTCCGGCGCTCTCCGTTATCTGCAACGGACATAACAATAATCTTCTCACC
AACGCTTCCCTGTCTTTCCCTGTTTCCAAGCAGCCTCAGTATCCCGGTCT
GAGCATTCAATGTGCTCGTGTTGGAGGTGTCGAGATTCCAAATAACAAGC
GGATTGAGTACTCGCTTCAGTATATTCATGGAGTTGGGCGCACAAGAGCT
CGCCAAATCCTCGTTGATCTCAAAATGGAGAACAAAATCACCAAAGACAT
GTCTGAGGAAGAGCTCATTACAATTCGTGACGAAGTCTCCAAATACATGA
TTGAAGGAGATTTGAGGCGGTTCAGTGCACTTGCTATTAGGAGATTGAAG
GAGATTCAATGCTACCGCGGAATTCGCCATATTCAGGGCTTGCCATGTAG
AGGGCAGCACACAAAGAACAATTGTCGCACATTGAAGGGTAAGAGGGTTG
CTATTGCTGGGAAAAAGAAAGCCCCTCGTTAATTAAATGACTTTTTTCCT
GTTTATTTAATGGATAGGGTTGATTTTCTATTGTATTGAATTTGAATGTG
AATCATTTTGACTACAAGCTTGGTTGCTTTCGATCCAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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