CK934491

Overview
NameCK934491
Unique NameCK934491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13225 contig Csv1_Contig13225:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_BACFN (30S ribosomal protein S13 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23
Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 1
Query:  217 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579
            R+ GV++P NKR E +L Y++G+GR+ + +IL    ++  +  KD ++++   IR+ + ++Y +EGDLR    L I+RL +I CYRG+RH  GLP RGQ TKNN RT KG++  +A KKKA +
Sbjct:    4 RIVGVDLPQNKRGEIALTYVYGIGRSSSAKILDKAGVDKDLKVKDWTDDQAAKIREIIGAEYKVEGDLRSEVQLNIKRLMDIGCYRGVRHRIGLPVRGQSTKNNARTRKGRKKTVANKKKATK 126          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_ALCBS (30S ribosomal protein S13 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23
Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555
            AR+ GV IP NK    SL YI G+GRTRA  I     +E     ++++ E+L  IR EV+K+  EGDLRR   + I+RL ++ CYRGIRH +GLP RGQ TK N RT KG R  I
Sbjct:    2 ARIAGVNIPENKHTVISLTYIFGIGRTRAESICATTGIEQTAKVRELTGEQLDAIRGEVAKFSTEGDLRREINMNIKRLMDLGCYRGIRHRRGLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_AGRT5 (30S ribosomal protein S13 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpsM PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23
Identity = 56/122 (45.90%), Postives = 84/122 (68.85%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSK-YMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV IP  KR+  +L YIHG+G   A++I+  V +  E ++ + +++ E++ IR+ + + Y +EGDLRR +++ I+RL ++ CYRG+RH +GLP RGQ T  N RT KG   AIAGKKK
Sbjct:    2 ARIAGVNIPTAKRVVIALTYIHGIGPKFAQEIMDKVGIPAEKRVHQ-LTDAEVLQIREAIDRDYQVEGDLRRETSMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_YERE8 (30S ribosomal protein S13 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 55/115 (47.83%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555
            AR+ G+ IP+ K    +L  I+G+G+TR++ I V   + EN    ++SEE++  +RDEV+KY++EGDLRR   L+I+RL ++  YRG+RH +GLP RGQ TK N RT KG R  I
Sbjct:    2 ARIAGINIPDQKHTVIALTAIYGIGKTRSQAICVAAGIAENVKISELSEEQIEKLRDEVAKYVVEGDLRREVTLSIKRLMDLGTYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_VIBCH (30S ribosomal protein S13 OS=Vibrio cholerae GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 52/115 (45.22%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555
            AR+ G+ IP++K    +L  I+G+G+TR++ IL DL +   +   +++EE++  +RD V+KY +EGDLRR  ++ I+RL ++ CYRG+RH + LP RGQ TK N RT KG R  I
Sbjct:    2 ARIAGINIPDHKHAVIALTAIYGIGKTRSKAILADLGIAESVKISELTEEQIDQLRDGVAKYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_SHELP (30S ribosomal protein S13 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555
            AR+ G+ IP+ K    +L  I+G+G TRA+QI     + E+   K++SE ++ T+R+EV+KY++EGDLRR  ++ I+RL ++ CYRG+RH + LP RGQ TK N RT KG R  I
Sbjct:    2 ARIAGINIPDQKHTVIALTAIYGIGLTRAQQICAATSIAEDAKIKELSEAQIDTLREEVAKYIVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_SHEAM (30S ribosomal protein S13 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555
            AR+ G+ IP++K    +L  I+G+GRTRA+ I     + E+   K++SE ++ T+R+EV+KY +EGDLRR  ++ I+RL ++ CYRG+RH + LP RGQ TK N RT KG R  I
Sbjct:    2 ARIAGINIPDHKHAVIALTAIYGIGRTRAKAICAATAIAEDAKIKELSEAQIDTLREEVAKYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_RUBXD (30S ribosomal protein S13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 55/121 (45.45%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYM-IEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV++P  KRIE +L YI+G+GR+ AR+++ +  ++ +   +D++E E+  +R  + + + +EGDL+R     IRRL +I CYRG+RH +GLP RGQ TK N R  KG R AI G+KK
Sbjct:    2 ARIAGVDLPREKRIEVALTYIYGIGRSTARRVIRETGVDPDTRVRDLAEGEIAALRRYIDENLKVEGDLKREVNQNIRRLMDIGCYRGLRHRRGLPVRGQRTKTNARQRKGPRPAIGGRKK 122          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_PSEA7 (30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain PA7) GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555
            AR+ GV IP+NK    SL YI+GVGRT A+ I     +      KD+S+E++  +R+EV+K+  EGDLRR   + I+RL ++ CYRG+RH +GLP RGQ TK N RT KG R  I
Sbjct:    2 ARIAGVNIPDNKHTVISLTYIYGVGRTTAQNICAATGVNPAAKIKDLSDEQIDQLRNEVAKHTTEGDLRREINMNIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_PROMA (30S ribosomal protein S13 OS=Prochlorococcus marinus GN=rpsM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ G+++P +KR+E +L YI+G+G TRA+ IL    +   I  KD+ + ++  +R     + IEGDLRR   +A++RL++I C RG RH   LP RGQ T+ N RT +G R  +AG+KK
Sbjct:    2 ARIAGIDLPRDKRVEIALTYIYGIGLTRAQNILAKTGVNPDIRVKDLEDGDVQKLRAATESFTIEGDLRRQEGMALKRLQDIGCLRGRRHRMSLPVRGQRTRTNARTRRGSRKTVAGRKK 121          
The following BLAST results are available for this feature:
BLAST of CK934491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_BACFN1.527e-2344.7230S ribosomal protein S13 OS=Bacteroides fragilis ... [more]
RS13_ALCBS1.527e-2350.4330S ribosomal protein S13 OS=Alcanivorax borkumens... [more]
RS13_AGRT51.527e-2345.9030S ribosomal protein S13 OS=Agrobacterium tumefac... [more]
RS13_YERE81.994e-2347.8330S ribosomal protein S13 OS=Yersinia enterocoliti... [more]
RS13_VIBCH1.994e-2345.2230S ribosomal protein S13 OS=Vibrio cholerae GN=rp... [more]
RS13_SHELP1.994e-2346.9630S ribosomal protein S13 OS=Shewanella loihica (s... [more]
RS13_SHEAM1.994e-2346.9630S ribosomal protein S13 OS=Shewanella amazonensi... [more]
RS13_RUBXD1.994e-2345.4530S ribosomal protein S13 OS=Rubrobacter xylanophi... [more]
RS13_PSEA71.994e-2349.5730S ribosomal protein S13 OS=Pseudomonas aeruginos... [more]
RS13_PROMA1.994e-2343.3330S ribosomal protein S13 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934491 ID=CK934491; Name=CK934491; organism=Citrus sinensis; type=EST; length=716bp
GGGGCACTCGAGCTTGCTGTTAGTCACCATTCCGTTTGGTTTCCGAGAAA
ACAAAAGAAACCAAAAGAGAAAATGGTACAAACACTTGCAATGCCTGTCG
CTCCGGCGCTCTCCGTTATCTGCAACGGACATAACAATAATCTTCTCACC
AACGCTTCCCTGTCTTTCCCTGTTTCCAAGCAGCCTCAGTATCCCGGTCT
GAGCATTCAATGTGCTCGTGTTGGAGGTGTCGAGATTCCAAATAACAAGC
GGATTGAGTACTCGCTTCAGTATATTCATGGAGTTGGGCGCACAAGAGCT
CGCCAAATCCTCGTTGATCTCAAAATGGAGAACAAAATCACCAAAGACAT
GTCTGAGGAAGAGCTCATTACAATTCGTGACGAAGTCTCCAAATACATGA
TTGAAGGAGATTTGAGGCGGTTCAGTGCACTTGCTATTAGGAGATTGAAG
GAGATTCAATGCTACCGCGGAATTCGCCATATTCAGGGCTTGCCATGTAG
AGGGCAGCACACAAAGAACAATTGTCGCACATTGAAGGGTAAGAGGGTTG
CTATTGCTGGGAAAAAGAAAGCCCCTCGTTAATTAAATGACTTTTTTCCT
GTTTATTTAATGGATAGGGTTGATTTTCTATTGTATTGAATTTGAATGTG
AATCATTTTGACTACAAGCTTGGTTGCTTTCGATCCAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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