CK934491
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_BACFN (30S ribosomal protein S13 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23 Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 1 Query: 217 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579 R+ GV++P NKR E +L Y++G+GR+ + +IL ++ + KD ++++ IR+ + ++Y +EGDLR L I+RL +I CYRG+RH GLP RGQ TKNN RT KG++ +A KKKA + Sbjct: 4 RIVGVDLPQNKRGEIALTYVYGIGRSSSAKILDKAGVDKDLKVKDWTDDQAAKIREIIGAEYKVEGDLRSEVQLNIKRLMDIGCYRGVRHRIGLPVRGQSTKNNARTRKGRKKTVANKKKATK 126
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_ALCBS (30S ribosomal protein S13 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23 Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555 AR+ GV IP NK SL YI G+GRTRA I +E ++++ E+L IR EV+K+ EGDLRR + I+RL ++ CYRGIRH +GLP RGQ TK N RT KG R I Sbjct: 2 ARIAGVNIPENKHTVISLTYIFGIGRTRAESICATTGIEQTAKVRELTGEQLDAIRGEVAKFSTEGDLRREINMNIKRLMDLGCYRGIRHRRGLPLRGQRTKTNARTRKGPRKPI 116
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_AGRT5 (30S ribosomal protein S13 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpsM PE=3 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23 Identity = 56/122 (45.90%), Postives = 84/122 (68.85%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSK-YMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ GV IP KR+ +L YIHG+G A++I+ V + E ++ + +++ E++ IR+ + + Y +EGDLRR +++ I+RL ++ CYRG+RH +GLP RGQ T N RT KG AIAGKKK Sbjct: 2 ARIAGVNIPTAKRVVIALTYIHGIGPKFAQEIMDKVGIPAEKRVHQ-LTDAEVLQIREAIDRDYQVEGDLRRETSMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_YERE8 (30S ribosomal protein S13 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23 Identity = 55/115 (47.83%), Postives = 79/115 (68.70%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555 AR+ G+ IP+ K +L I+G+G+TR++ I V + EN ++SEE++ +RDEV+KY++EGDLRR L+I+RL ++ YRG+RH +GLP RGQ TK N RT KG R I Sbjct: 2 ARIAGINIPDQKHTVIALTAIYGIGKTRSQAICVAAGIAENVKISELSEEQIEKLRDEVAKYVVEGDLRREVTLSIKRLMDLGTYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_VIBCH (30S ribosomal protein S13 OS=Vibrio cholerae GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23 Identity = 52/115 (45.22%), Postives = 79/115 (68.70%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555 AR+ G+ IP++K +L I+G+G+TR++ IL DL + + +++EE++ +RD V+KY +EGDLRR ++ I+RL ++ CYRG+RH + LP RGQ TK N RT KG R I Sbjct: 2 ARIAGINIPDHKHAVIALTAIYGIGKTRSKAILADLGIAESVKISELTEEQIDQLRDGVAKYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_SHELP (30S ribosomal protein S13 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23 Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555 AR+ G+ IP+ K +L I+G+G TRA+QI + E+ K++SE ++ T+R+EV+KY++EGDLRR ++ I+RL ++ CYRG+RH + LP RGQ TK N RT KG R I Sbjct: 2 ARIAGINIPDQKHTVIALTAIYGIGLTRAQQICAATSIAEDAKIKELSEAQIDTLREEVAKYIVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_SHEAM (30S ribosomal protein S13 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23 Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555 AR+ G+ IP++K +L I+G+GRTRA+ I + E+ K++SE ++ T+R+EV+KY +EGDLRR ++ I+RL ++ CYRG+RH + LP RGQ TK N RT KG R I Sbjct: 2 ARIAGINIPDHKHAVIALTAIYGIGRTRAKAICAATAIAEDAKIKELSEAQIDTLREEVAKYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_RUBXD (30S ribosomal protein S13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23 Identity = 55/121 (45.45%), Postives = 83/121 (68.60%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYM-IEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ GV++P KRIE +L YI+G+GR+ AR+++ + ++ + +D++E E+ +R + + + +EGDL+R IRRL +I CYRG+RH +GLP RGQ TK N R KG R AI G+KK Sbjct: 2 ARIAGVDLPREKRIEVALTYIYGIGRSTARRVIRETGVDPDTRVRDLAEGEIAALRRYIDENLKVEGDLKREVNQNIRRLMDIGCYRGLRHRRGLPVRGQRTKTNARQRKGPRPAIGGRKK 122
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_PSEA7 (30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain PA7) GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23 Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 555 AR+ GV IP+NK SL YI+GVGRT A+ I + KD+S+E++ +R+EV+K+ EGDLRR + I+RL ++ CYRG+RH +GLP RGQ TK N RT KG R I Sbjct: 2 ARIAGVNIPDNKHTVISLTYIYGVGRTTAQNICAATGVNPAAKIKDLSDEQIDQLRNEVAKHTTEGDLRREINMNIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_PROMA (30S ribosomal protein S13 OS=Prochlorococcus marinus GN=rpsM PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23 Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 1 Query: 214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570 AR+ G+++P +KR+E +L YI+G+G TRA+ IL + I KD+ + ++ +R + IEGDLRR +A++RL++I C RG RH LP RGQ T+ N RT +G R +AG+KK Sbjct: 2 ARIAGIDLPRDKRVEIALTYIYGIGLTRAQNILAKTGVNPDIRVKDLEDGDVQKLRAATESFTIEGDLRRQEGMALKRLQDIGCLRGRRHRMSLPVRGQRTRTNARTRRGSRKTVAGRKK 121 The following BLAST results are available for this feature:
BLAST of CK934491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK934491 ID=CK934491; Name=CK934491; organism=Citrus sinensis; type=EST; length=716bpback to top |