CK934491

Overview
NameCK934491
Unique NameCK934491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13225 contig Csv1_Contig13225:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_DECAR (30S ribosomal protein S13 OS=Dechloromonas aromatica (strain RCB) GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.277e-27
Identity = 60/119 (50.42%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 567
            AR+ GV IPN++  E +L  I G+GRTRA++I     +   +  KD+S+ ++  +RDEV K+ +EGDLRR   + I+RL ++ CYRG+RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct:    2 ARIAGVNIPNHQHAEIALTAIFGIGRTRAQKICDAAGVGRNVKMKDLSDSDMDRLRDEVGKFTVEGDLRREVTMNIKRLMDLGCYRGLRHRKGLPCRGQRTRTNARTRKGPRKAIAGKK 120          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_CHRVO (30S ribosomal protein S13 OS=Chromobacterium violaceum GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.277e-27
Identity = 61/119 (51.26%), Postives = 81/119 (68.07%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 567
            AR+ GV IPN+      LQ I GVG+TRA+QI     +      KD++E E+  +RD+V+K+ +EGDLRR   ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct:    2 ARIAGVNIPNHAHAVIGLQAIFGVGQTRAQQICAAASVNPSTKVKDLTEAEMEALRDQVAKFTVEGDLRREITMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_OCEIH (30S ribosomal protein S13 OS=Oceanobacillus iheyensis GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.973e-27
Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ G++IP +KR+  SL YI+GVG+T A+QIL +  + E+   +D++E+EL  IR  V +Y  EGDLRR  +L I+RL EI  YRGIRH +GLP RGQ TKNN RT KG R  +A KKK
Sbjct:    2 ARIAGIDIPRDKRVVISLTYIYGVGKTTAQQILKEAGVSEDTRVRDLTEDELGRIRQAVDQYNTEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQKTKNNSRTRKGPRKTMANKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_MYCMS (30S ribosomal protein S13 OS=Mycoplasma mycoides subsp. mycoides SC GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.973e-27
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GVEIPNNKR+  SL YI+G+G   A+ +L  L +   I  KD++EE++  I  E+SKY  EG LRR  +L I+RL EI  YRG+RH +GLP RGQ +K N RT+KG R  +A KKK
Sbjct:    2 ARISGVEIPNNKRVVVSLTYIYGIGLPTAQSVLKTLNISEDIRVKDLTEEQIKNISMEISKYKTEGKLRREVSLNIKRLMEIGSYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_CLOAB (30S ribosomal protein S13 OS=Clostridium acetobutylicum GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.973e-27
Identity = 63/122 (51.64%), Postives = 87/122 (71.31%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSK-YMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ G+++P  KR+E  L YI+G+G T +R+I+    +  E ++ KD++EEE+  +RD ++K + IEGDLRR  AL I+RL EI CYRGIRH +GLP RGQ TK N RT KG + A+A KKK
Sbjct:    2 ARIAGIDLPKEKRVEIGLTYIYGIGLTSSRKIIKATSVNPETRV-KDLTEEEVNALRDYINKNFKIEGDLRREVALNIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKKAVASKKK 122          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRTD (30S ribosomal protein S13 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRT2 (30S ribosomal protein S13 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRT1 (30S ribosomal protein S13 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRS7 (30S ribosomal protein S13 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STREM (30S ribosomal protein S13 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
The following BLAST results are available for this feature:
BLAST of CK934491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_DECAR2.277e-2750.4230S ribosomal protein S13 OS=Dechloromonas aromati... [more]
RS13_CHRVO2.277e-2751.2630S ribosomal protein S13 OS=Chromobacterium viola... [more]
RS13_OCEIH2.973e-2754.1730S ribosomal protein S13 OS=Oceanobacillus iheyen... [more]
RS13_MYCMS2.973e-2752.5030S ribosomal protein S13 OS=Mycoplasma mycoides s... [more]
RS13_CLOAB2.973e-2751.6430S ribosomal protein S13 OS=Clostridium acetobuty... [more]
RS13_STRTD3.883e-2753.3330S ribosomal protein S13 OS=Streptococcus thermop... [more]
RS13_STRT23.883e-2753.3330S ribosomal protein S13 OS=Streptococcus thermop... [more]
RS13_STRT13.883e-2753.3330S ribosomal protein S13 OS=Streptococcus thermop... [more]
RS13_STRS73.883e-2753.3330S ribosomal protein S13 OS=Streptococcus equi su... [more]
RS13_STREM3.883e-2753.3330S ribosomal protein S13 OS=Streptococcus equi su... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934491 ID=CK934491; Name=CK934491; organism=Citrus sinensis; type=EST; length=716bp
GGGGCACTCGAGCTTGCTGTTAGTCACCATTCCGTTTGGTTTCCGAGAAA
ACAAAAGAAACCAAAAGAGAAAATGGTACAAACACTTGCAATGCCTGTCG
CTCCGGCGCTCTCCGTTATCTGCAACGGACATAACAATAATCTTCTCACC
AACGCTTCCCTGTCTTTCCCTGTTTCCAAGCAGCCTCAGTATCCCGGTCT
GAGCATTCAATGTGCTCGTGTTGGAGGTGTCGAGATTCCAAATAACAAGC
GGATTGAGTACTCGCTTCAGTATATTCATGGAGTTGGGCGCACAAGAGCT
CGCCAAATCCTCGTTGATCTCAAAATGGAGAACAAAATCACCAAAGACAT
GTCTGAGGAAGAGCTCATTACAATTCGTGACGAAGTCTCCAAATACATGA
TTGAAGGAGATTTGAGGCGGTTCAGTGCACTTGCTATTAGGAGATTGAAG
GAGATTCAATGCTACCGCGGAATTCGCCATATTCAGGGCTTGCCATGTAG
AGGGCAGCACACAAAGAACAATTGTCGCACATTGAAGGGTAAGAGGGTTG
CTATTGCTGGGAAAAAGAAAGCCCCTCGTTAATTAAATGACTTTTTTCCT
GTTTATTTAATGGATAGGGTTGATTTTCTATTGTATTGAATTTGAATGTG
AATCATTTTGACTACAAGCTTGGTTGCTTTCGATCCAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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