CK934491

Overview
NameCK934491
Unique NameCK934491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13225 contig Csv1_Contig13225:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRE4 (30S ribosomal protein S13 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRA5 (30S ribosomal protein S13 OS=Streptococcus agalactiae serotype V GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G + +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRA3 (30S ribosomal protein S13 OS=Streptococcus agalactiae serotype III GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G + +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRA1 (30S ribosomal protein S13 OS=Streptococcus agalactiae serotype Ia GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G + +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_RICBR (30S ribosomal protein S13 OS=Rickettsia bellii (strain RML369-C) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 63/122 (51.64%), Postives = 91/122 (74.59%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK-MENKITKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 573
            AR+  V IP+NKR+  SL YI+G+G T A+ I    K +E+K  KD++++ELI++R+ + ++Y +EGDLRR   L I++ K+I+ Y+G+RHI+ LP RGQ+T +N RT KGK VAIAGKKKA
Sbjct:    2 ARIASVNIPDNKRLVVSLTYIYGLGTTMAKTICKKAKILEDKKVKDLTDQELISLRNIIENEYKVEGDLRREVTLNIKKKKDIRSYQGLRHIRKLPVRGQNTHSNARTRKGKAVAIAGKKKA 123          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_RICB8 (30S ribosomal protein S13 OS=Rickettsia bellii (strain OSU 85-389) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 63/122 (51.64%), Postives = 91/122 (74.59%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK-MENKITKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 573
            AR+  V IP+NKR+  SL YI+G+G T A+ I    K +E+K  KD++++ELI++R+ + ++Y +EGDLRR   L I++ K+I+ Y+G+RHI+ LP RGQ+T +N RT KGK VAIAGKKKA
Sbjct:    2 ARIASVNIPDNKRLVVSLTYIYGLGTTMAKTICKKAKILEDKKVKDLTDQELISLRNIIENEYKVEGDLRREVTLNIKKKKDIRSYQGLRHIRKLPVRGQNTHSNARTRKGKAVAIAGKKKA 123          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max GN=RSP13 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 57/120 (47.50%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  196 GLSIQCARVGGV---EIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR 546
            G+ +Q   +GG    EIP+NKR+ Y+LQ +HG+GR++A+ I+ +L +ENK  KD+S+ EL +IR+ +SKY+I  DL++     + RL  IQCYRGIRH+  LPCRGQ T  N RT + ++
Sbjct:   23 GVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRK 142          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRSY (30S ribosomal protein S13 OS=Streptococcus suis (strain 05ZYH33) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   +  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRSV (30S ribosomal protein S13 OS=Streptococcus sanguinis (strain SK36) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 65/120 (54.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ E+   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVVSLTYVYGIGLPTSKKILAAAGVSEDIRVKDLTIEQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRS2 (30S ribosomal protein S13 OS=Streptococcus suis (strain 98HAH33) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   +  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
The following BLAST results are available for this feature:
BLAST of CK934491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_STRE43.883e-2753.3330S ribosomal protein S13 OS=Streptococcus equi su... [more]
RS13_STRA53.883e-2753.3330S ribosomal protein S13 OS=Streptococcus agalact... [more]
RS13_STRA33.883e-2753.3330S ribosomal protein S13 OS=Streptococcus agalact... [more]
RS13_STRA13.883e-2753.3330S ribosomal protein S13 OS=Streptococcus agalact... [more]
RS13_RICBR3.883e-2751.6430S ribosomal protein S13 OS=Rickettsia bellii (st... [more]
RS13_RICB83.883e-2751.6430S ribosomal protein S13 OS=Rickettsia bellii (st... [more]
RT13_SOYBN5.072e-2747.50Small ribosomal subunit protein S13, mitochondrial... [more]
RS13_STRSY5.072e-2752.5030S ribosomal protein S13 OS=Streptococcus suis (s... [more]
RS13_STRSV5.072e-2754.1730S ribosomal protein S13 OS=Streptococcus sanguin... [more]
RS13_STRS25.072e-2752.5030S ribosomal protein S13 OS=Streptococcus suis (s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934491 ID=CK934491; Name=CK934491; organism=Citrus sinensis; type=EST; length=716bp
GGGGCACTCGAGCTTGCTGTTAGTCACCATTCCGTTTGGTTTCCGAGAAA
ACAAAAGAAACCAAAAGAGAAAATGGTACAAACACTTGCAATGCCTGTCG
CTCCGGCGCTCTCCGTTATCTGCAACGGACATAACAATAATCTTCTCACC
AACGCTTCCCTGTCTTTCCCTGTTTCCAAGCAGCCTCAGTATCCCGGTCT
GAGCATTCAATGTGCTCGTGTTGGAGGTGTCGAGATTCCAAATAACAAGC
GGATTGAGTACTCGCTTCAGTATATTCATGGAGTTGGGCGCACAAGAGCT
CGCCAAATCCTCGTTGATCTCAAAATGGAGAACAAAATCACCAAAGACAT
GTCTGAGGAAGAGCTCATTACAATTCGTGACGAAGTCTCCAAATACATGA
TTGAAGGAGATTTGAGGCGGTTCAGTGCACTTGCTATTAGGAGATTGAAG
GAGATTCAATGCTACCGCGGAATTCGCCATATTCAGGGCTTGCCATGTAG
AGGGCAGCACACAAAGAACAATTGTCGCACATTGAAGGGTAAGAGGGTTG
CTATTGCTGGGAAAAAGAAAGCCCCTCGTTAATTAAATGACTTTTTTCCT
GTTTATTTAATGGATAGGGTTGATTTTCTATTGTATTGAATTTGAATGTG
AATCATTTTGACTACAAGCTTGGTTGCTTTCGATCCAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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