CK934491

Overview
NameCK934491
Unique NameCK934491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13225 contig Csv1_Contig13225:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRMU (30S ribosomal protein S13 OS=Streptococcus mutans GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVVSLTYVYGIGLPTSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_RICRS (30S ribosomal protein S13 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 62/122 (50.82%), Postives = 91/122 (74.59%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 573
            AR+  V IP+NKR+  SL YI+G+G T A +I    K+ ++K  K+++++ELI +R+ + S+Y +EGDLRR   L I++ K+I+CY+G+RHI+ LP RGQ+T +N RT KGK +AIAGKKKA
Sbjct:    2 ARIASVNIPDNKRVVVSLTYIYGLGPTMAAEICNKAKISKDKKVKELTDQELIGLRNIIESEYKVEGDLRREVTLNIKKKKDIRCYQGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKA 123          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_RICRO (30S ribosomal protein S13 OS=Rickettsia rickettsii (strain Iowa) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 62/122 (50.82%), Postives = 91/122 (74.59%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 573
            AR+  V IP+NKR+  SL YI+G+G T A +I    K+ ++K  K+++++ELI +R+ + S+Y +EGDLRR   L I++ K+I+CY+G+RHI+ LP RGQ+T +N RT KGK +AIAGKKKA
Sbjct:    2 ARIASVNIPDNKRVVVSLTYIYGLGPTMAAEICNKAKISKDKKVKELTDQELIGLRNIIESEYKVEGDLRREVTLNIKKKKDIRCYQGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKA 123          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_CYAP7 (30S ribosomal protein S13 OS=Cyanothece sp. (strain PCC 7424) GN=rpsM PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 57/123 (46.34%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAP 576
            AR+ GV++P +KR+E +L Y++G+G +R+++IL +  +  +   KD+S+E+ + +R  + + Y IEGDLRR+  + I+RL +I  YRG RH QGLP RGQ T+ N RT +G+R+ +AGKKKAP
Sbjct:    2 ARIAGVDLPRDKRVEIALTYLYGIGLSRSKEILANTGVNPDTRVKDLSDEDALALRSYIEANYQIEGDLRRWETMNIKRLVDIGTYRGRRHRQGLPVRGQRTRTNARTRRGRRLTVAGKKKAP 124          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RR13_GRATL (30S ribosomal protein S13, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rps13 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 61/123 (49.59%), Postives = 88/123 (71.54%), Query Frame = 1
Query:  217 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK-YMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 579
            R+ GV++P NKRIE SL YI+G+G+++A +IL  LK+   I TK++ +E+++ IR  ++  Y IEGDL+R  ++ I+RL  I  YRG RH  GLP RGQ+T+ N RT +G +  +AGKKKAPR
Sbjct:    3 RIVGVDLPKNKRIEISLTYIYGIGKSKAIEILEQLKINRNIKTKELKDEQIVLIRQILNNSYQIEGDLKRVESMNIKRLMTISSYRGKRHQLGLPLRGQNTRTNARTKRGIKKTMAGKKKAPR 125          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRPZ (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRPM (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M28 GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRPG (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRPF (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRPD (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
The following BLAST results are available for this feature:
BLAST of CK934491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_STRMU5.072e-2753.3330S ribosomal protein S13 OS=Streptococcus mutans ... [more]
RS13_RICRS5.072e-2750.8230S ribosomal protein S13 OS=Rickettsia rickettsii... [more]
RS13_RICRO5.072e-2750.8230S ribosomal protein S13 OS=Rickettsia rickettsii... [more]
RS13_CYAP75.072e-2746.3430S ribosomal protein S13 OS=Cyanothece sp. (strai... [more]
RR13_GRATL5.072e-2749.5930S ribosomal protein S13, chloroplastic OS=Gracil... [more]
RS13_STRPZ6.624e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPM6.624e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPG6.624e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPF6.624e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPD6.624e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934491 ID=CK934491; Name=CK934491; organism=Citrus sinensis; type=EST; length=716bp
GGGGCACTCGAGCTTGCTGTTAGTCACCATTCCGTTTGGTTTCCGAGAAA
ACAAAAGAAACCAAAAGAGAAAATGGTACAAACACTTGCAATGCCTGTCG
CTCCGGCGCTCTCCGTTATCTGCAACGGACATAACAATAATCTTCTCACC
AACGCTTCCCTGTCTTTCCCTGTTTCCAAGCAGCCTCAGTATCCCGGTCT
GAGCATTCAATGTGCTCGTGTTGGAGGTGTCGAGATTCCAAATAACAAGC
GGATTGAGTACTCGCTTCAGTATATTCATGGAGTTGGGCGCACAAGAGCT
CGCCAAATCCTCGTTGATCTCAAAATGGAGAACAAAATCACCAAAGACAT
GTCTGAGGAAGAGCTCATTACAATTCGTGACGAAGTCTCCAAATACATGA
TTGAAGGAGATTTGAGGCGGTTCAGTGCACTTGCTATTAGGAGATTGAAG
GAGATTCAATGCTACCGCGGAATTCGCCATATTCAGGGCTTGCCATGTAG
AGGGCAGCACACAAAGAACAATTGTCGCACATTGAAGGGTAAGAGGGTTG
CTATTGCTGGGAAAAAGAAAGCCCCTCGTTAATTAAATGACTTTTTTCCT
GTTTATTTAATGGATAGGGTTGATTTTCTATTGTATTGAATTTGAATGTG
AATCATTTTGACTACAAGCTTGGTTGCTTTCGATCCAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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