CK934491

Overview
NameCK934491
Unique NameCK934491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13225 contig Csv1_Contig13225:1..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRPC (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRPB (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRP8 (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M18 GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRP6 (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M6 GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRP3 (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M3 GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_STRP1 (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M1 GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_RICPU (30S ribosomal protein S13 OS=Rickettsia peacockii (strain Rustic) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 62/122 (50.82%), Postives = 91/122 (74.59%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 573
            AR+  V IP+NKR+  SL YI+G+G T A +I    K+ ++K  K+++++ELI +R+ + S+Y +EGDLRR   L I++ K+I+CY+G+RHI+ LP RGQ+T +N RT KGK +AIAGKKKA
Sbjct:    2 ARIASVNIPDNKRLVVSLTYIYGLGPTMAAEICNKAKISKDKKVKELTDQELIGLRNIIESEYKVEGDLRREVTLNIKKKKDIRCYQGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKA 123
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_RICAE (30S ribosomal protein S13 OS=Rickettsia africae (strain ESF-5) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 62/122 (50.82%), Postives = 91/122 (74.59%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV-SKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 573
            AR+  V IP+NKR+  SL YI+G+G T A +I    K+ ++K  K+++++ELI +R+ + S+Y +EGDLRR   L I++ K+I+CY+G+RHI+ LP RGQ+T +N RT KGK +AIAGKKKA
Sbjct:    2 ARIASVNIPDNKRLVVSLTYIYGLGPTMAAEICNKAKISKDKKVKELTDQELIGLRNIIESEYKVEGDLRREVTLNIKKKKDIRCYQGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKA 123
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_MACCJ (30S ribosomal protein S13 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 62/120 (51.67%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV++P  KR+  +L YI+G+GRT A++IL +  + E+   +D++E+EL  IR+ V  Y +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KG    +A KKK
Sbjct:    2 ARIAGVDVPREKRVVIALTYIYGIGRTSAQKILAEANVSEDTRVRDLTEDELGRIREIVDGYKVEGDLRREVNLNIKRLMEIASYRGIRHRRGLPTRGQNTKNNARTRKGPVKTVANKKK 121
[Close]
BLAST of CK934491 vs. ExPASy Swiss-Prot
Match: RS13_ENTFA (30S ribosomal protein S13 OS=Enterococcus faecalis GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.624e-27
Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  214 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFSALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 570
            AR+ GV+IP +KR+  SL YI+G+G T A+++L ++ +   +  +D++ E+   IR E+ K  +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KG    +AGKKK
Sbjct:    2 ARIAGVDIPRDKRVVVSLTYIYGIGNTTAKKVLANVGVSEDVRVRDLTNEQTDAIRAEIDKLKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPTRGQNTKNNARTRKGPTKTVAGKKK 121
The following BLAST results are available for this feature:
BLAST of CK934491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_STRPC6.624e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPB6.624e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRP86.624e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRP66.624e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRP36.624e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRP16.624e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_RICPU6.624e-2750.8230S ribosomal protein S13 OS=Rickettsia peacockii ... [more]
RS13_RICAE6.624e-2750.8230S ribosomal protein S13 OS=Rickettsia africae (s... [more]
RS13_MACCJ6.624e-2751.6730S ribosomal protein S13 OS=Macrococcus caseolyti... [more]
RS13_ENTFA6.624e-2750.0030S ribosomal protein S13 OS=Enterococcus faecalis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934491 ID=CK934491; Name=CK934491; organism=Citrus sinensis; type=EST; length=716bp
GGGGCACTCGAGCTTGCTGTTAGTCACCATTCCGTTTGGTTTCCGAGAAA
ACAAAAGAAACCAAAAGAGAAAATGGTACAAACACTTGCAATGCCTGTCG
CTCCGGCGCTCTCCGTTATCTGCAACGGACATAACAATAATCTTCTCACC
AACGCTTCCCTGTCTTTCCCTGTTTCCAAGCAGCCTCAGTATCCCGGTCT
GAGCATTCAATGTGCTCGTGTTGGAGGTGTCGAGATTCCAAATAACAAGC
GGATTGAGTACTCGCTTCAGTATATTCATGGAGTTGGGCGCACAAGAGCT
CGCCAAATCCTCGTTGATCTCAAAATGGAGAACAAAATCACCAAAGACAT
GTCTGAGGAAGAGCTCATTACAATTCGTGACGAAGTCTCCAAATACATGA
TTGAAGGAGATTTGAGGCGGTTCAGTGCACTTGCTATTAGGAGATTGAAG
GAGATTCAATGCTACCGCGGAATTCGCCATATTCAGGGCTTGCCATGTAG
AGGGCAGCACACAAAGAACAATTGTCGCACATTGAAGGGTAAGAGGGTTG
CTATTGCTGGGAAAAAGAAAGCCCCTCGTTAATTAAATGACTTTTTTCCT
GTTTATTTAATGGATAGGGTTGATTTTCTATTGTATTGAATTTGAATGTG
AATCATTTTGACTACAAGCTTGGTTGCTTTCGATCCAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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