CK934494

Overview
NameCK934494
Unique NameCK934494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934494_ssr26 microsatellite CK934494_ssr26:26..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934494_ssr125 microsatellite CK934494_ssr125:125..139. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934494_ssr186 microsatellite CK934494_ssr186:186..197. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1690 contig Csv1_Contig1690:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.526e-28
Identity = 73/169 (43.20%), Postives = 101/169 (59.76%), Query Frame = 2
Query:  197 DPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            DP  LQD CVA + T+ + VNG  CK     +  DF++  L  P  T    G+  T  +V+ +PGLNTLGV +AR D+APGG++PPHTHPR ++I  V++G+L VGF ++      L +K +  G+ FVFP+GL+HF  N G   A VI+   SQ  G   I   +F S
Sbjct:   26 DPSPLQDYCVATNETNGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGS 194          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  209 LQDVCVADLTSPIKVNGFPCKA--NFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            +QD CVAD   P   +G+ CK     +E DF    L     T+N   + VT A      G+N LGVSLAR+D A GG+ P HTHP A+E++ V++G +  GF ++AN +  K++ +G++ VFP+GL+HFQ N+G  PA     F S   G   +   LFA+
Sbjct:   22 VQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFAN 182          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = 2
Query:  209 LQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLF 679
            +QD CVAD  +P    G+ CK  A  +  DF    L     T N F + VT A     PG+N LG+SLAR+D  PGG+ P HTHP A+E++ V++G +  GF  + N    K++KKG+  VFP+GL+HFQ N G+ PA     F+S   G   +   LF
Sbjct:   20 VQDFCVADYKAPDGPAGYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALF 178          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.638e-27
Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = 2
Query:  209 LQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLF 679
            +QD CVADL +P    GF CK  A+    DF    L     T+N   + VT A V   PG+N LG+S+AR+D A GG+ P HTHP A+E++ V +G +  GF  + N    ++++KG+  VFP+GL+HFQ N G  PA   A F S   G   +   LF
Sbjct:   25 VQDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALF 183          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.139e-27
Identity = 77/169 (45.56%), Postives = 97/169 (57.40%), Query Frame = 2
Query:  197 DPEMLQDVCVA-DLTSPIKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            DP  LQD CVA    + + VNG  CK     +  DFF+  L  P  TN   GS V  AN   IPGLNTLGV +ARID+APGG+ PPH HPRA+EI+ V++G+L VGF ++ +    L SK +  G+ FV P GLV F  N G   A  I    SQ  G  ++   +F S
Sbjct:   26 DPSPLQDYCVAVPEKNGVFVNGEFCKDPKLVTSDDFFASGLNIPGNTNKRLGSFVNPAN---IPGLNTLGVGIARIDFAPGGLIPPHIHPRASEIILVIKGKLLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAVGSQNPGYISVGDAVFGS 191          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.793e-27
Identity = 65/159 (40.88%), Postives = 88/159 (55.35%), Query Frame = 2
Query:  209 LQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLF 679
            +QD CVAD  +P    G+ CK  A  +  DF    L     T N   + VT A     PG+N LG+SLAR+D  PGG+ P HTHP A+E++ V++G +  GF  + N    K++KKG+  VFP+GL+HFQ N G  PA     F+S   G   +   LF
Sbjct:   20 VQDFCVADYKAPDGPAGYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALF 178          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.648e-27
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  206 MLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFT-TANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            + QD CVADLT      G+PCKA+    DF    LA    T+N   + VT A V   PG+N LG+S AR+D A GG+ P HTHP A+E++FV +G +  GF T ++N + ++++  G+  VFP+GL+H+Q N G   A  +  F+    G       LFA+
Sbjct:   24 LTQDFCVADLTCSDTPAGYPCKASVGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFAN 184          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26
Identity = 67/171 (39.18%), Postives = 101/171 (59.06%), Query Frame = 2
Query:  194 ADPEMLQDVCVADLTSP---IKVNGFPCK--ANFSEMDFFSDKLAKPAATNNT-FGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASV-IAGFNSQLQGTPNIALTLFAS 685
            +DP+ LQD CV+   S    I +NG  CK     S  DF +  L++P  T    F   VT      +PGLNT+G+++AR+D+   G+ PPH HPRA+E+   L+G L VGF  T+  + ++ +  GE FVFP+GL+HF  N   V +++ ++G +SQ  GT  ++L+ F S
Sbjct:   18 SDPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFIS 188          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.365e-26
Identity = 63/164 (38.41%), Postives = 97/164 (59.15%), Query Frame = 2
Query:  206 MLQDVCVADLTSPIKV-NGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA-NVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            + QD CVA+L       +G+ C+  A  +  DF+S  LA+P      F +++ +A VQ  P +N LG+S +R+D  PGG+ P HTHP  +E+++VL+G L  GF +++ N +  K + KG  FVFP+GL+HFQ N G+  A   A ++S   G   +   LFA+
Sbjct:   27 LTQDFCVANLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSSDNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFAN 190          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 74/175 (42.29%), Postives = 100/175 (57.14%), Query Frame = 2
Query:  188 AAADPEMLQDVCVADLTS--PIKVN---GFPCK--ANFSEMDF-FSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDY-APGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A  DP+ +QD CV D     P+++     +PC+  AN +  DF FS   A    +  T  + V+    Q  PGL+TLG+S AR D  A GG+NPPH HPRATE   VL G++  GF  +   L +K +++GE  VFPR +VHFQ N G+ PA+V   FNS+  G   I  T+F S
Sbjct:   21 ARGDPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQ-FPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDSGGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGS 194          
The following BLAST results are available for this feature:
BLAST of CK934494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL14_ARATH2.526e-2843.20Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL33_ARATH5.628e-2840.37Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
AB19B_PRUPE5.628e-2841.51Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
ABP20_PRUPE1.638e-2741.51Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL13_ARATH2.139e-2745.56Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
AB19A_PRUPE2.793e-2740.88Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL814_ORYSJ3.648e-2740.37Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GL11_ARATH1.811e-2639.18Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL813_ORYSJ2.365e-2638.41Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GL24_ORYSJ4.033e-2642.29Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004258_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934494 ID=CK934494; Name=CK934494; organism=Citrus sinensis; type=EST; length=688bp
GGGGAAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCT
CTATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATA
ATTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGAC
ACTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATC
CCGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAA
GTCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTC
AGACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAG
TAACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTC
TCACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACAC
GCACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACG
TAGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAG
GGTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAA
TGGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGG
GGACTCCGAACATTGCTCTTACATTGTTTGCATCTACG
back to top