CK934499

Overview
NameCK934499
Unique NameCK934499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934499_ssr401 microsatellite CK934499_ssr401:401..420. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1691 contig Csv1_Contig1691:1..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.894e-29
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L PVD FV+T D   EPP++T NTVLS+L+VDYPV K++CYVSDD  + L F +L E S+FAK WVPFCKK+N++ RAP  YF
Sbjct:  354 QLAPVDFFVSTVDPSKEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKFNIEPRAPEWYF 437

HSP 2 Score: 36.1946 bits (82), Expect = 1.894e-29
Identity = 18/44 (40.91%), Postives = 23/44 (52.27%), Query Frame = 3 
Query:  198 NHGFA-WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            N  FA W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  302 NDAFALWLISVICEIWFAMSWILDQFPKWLPIERETYLDRLSLR 345
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.467e-29
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L PVD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FA+ WVPFCKKY+++ RAP  YF
Sbjct:  344 QLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYF 427

HSP 2 Score: 36.5798 bits (83), Expect = 2.467e-29
Identity = 16/38 (42.11%), Postives = 21/38 (55.26%), Query Frame = 3 
Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W L+ +CE  F   WIL    KW+P+  +TY  RL  R
Sbjct:  298 WLLSVICEIWFALSWILDQFPKWSPINRETYLDRLALR 335
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.467e-29
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L PVD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FA+ WVPFCKKY+++ RAP  YF
Sbjct:  344 QLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYF 427

HSP 2 Score: 36.5798 bits (83), Expect = 2.467e-29
Identity = 16/38 (42.11%), Postives = 21/38 (55.26%), Query Frame = 3 
Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W L+ +CE  F   WIL    KW+P+  +TY  RL  R
Sbjct:  298 WLLSVICEIWFALSWILDQFPKWSPINRETYLDRLALR 335
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.443e-29
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L PVD+FV+T D   EPP++T NTVLS+L+VDYPV K+ACYVSDD  + L F SL E ++FAK WVPFCKK+N++ RAP  YF
Sbjct:  350 QLVPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVACYVSDDGSAMLTFESLSETAEFAKKWVPFCKKFNIEPRAPEFYF 433

HSP 2 Score: 35.4242 bits (80), Expect = 5.443e-29
Identity = 17/44 (38.64%), Postives = 22/44 (50.00%), Query Frame = 3 
Query:  195 KNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            KN    W  + +CE  F F W+L    KW P+  +TY  RL  R
Sbjct:  298 KNAYPLWLTSVICEIWFAFSWLLDQFPKWYPINRETYLDRLAIR 341
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.563e-28
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L P+D FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FAK WVPFCKKY+++ RAP  YF
Sbjct:  354 QLAPIDFFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKYSIEPRAPEWYF 437

HSP 2 Score: 34.2686 bits (77), Expect = 1.563e-28
Identity = 15/38 (39.47%), Postives = 20/38 (52.63%), Query Frame = 3 
Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  308 WLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLR 345
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.651e-28
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L PVD+FV+T D   EPP++T NTVLS+LAVDYPV K+ACYVSDD  + L F +L E ++F+K WVPFCKK+N++ RAP  YF
Sbjct:  337 QLAPVDVFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVACYVSDDGSAMLTFEALSETAEFSKKWVPFCKKFNIEPRAPEFYF 420

HSP 2 Score: 33.4982 bits (75), Expect = 2.651e-28
Identity = 14/38 (36.84%), Postives = 20/38 (52.63%), Query Frame = 3 
Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W  + +CE  F F W+L    KW P+  +T+  RL  R
Sbjct:  291 WLTSVICEIWFAFSWLLDQFPKWYPINRETFLDRLALR 328
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.449e-28
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L PVD FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FAK WVPFCK+Y+++ RAP  YF
Sbjct:  353 QLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYF 436

HSP 2 Score: 34.2686 bits (77), Expect = 3.449e-28
Identity = 15/38 (39.47%), Postives = 20/38 (52.63%), Query Frame = 3 
Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  307 WLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLR 344
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.449e-28
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L PVD FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FAK WVPFCK+Y+++ RAP  YF
Sbjct:  353 QLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYF 436

HSP 2 Score: 34.2686 bits (77), Expect = 3.449e-28
Identity = 15/38 (39.47%), Postives = 20/38 (52.63%), Query Frame = 3 
Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  307 WLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLR 344
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.492e-28
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L  VD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L+F SL E S+FA+ WVPFCKKY+++ RAP  YF
Sbjct:  334 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYSIEPRAPEWYF 417

HSP 2 Score: 33.8834 bits (76), Expect = 4.492e-28
Identity = 15/38 (39.47%), Postives = 20/38 (52.63%), Query Frame = 3 
Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  288 WLVSVICEIWFALSWILDQFPKWFPVNRETYLDRLALR 325
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.854e-28
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L  VD FV+T D   EPP+IT NTVLS+LA+DYPV K++CYVSDD  + L+F SLVE + FA+ WVPFCKKY+++ RAP  YF
Sbjct:  259 QLAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLSFESLVETADFARKWVPFCKKYSIEPRAPEFYF 342

HSP 2 Score: 35.039 bits (79), Expect = 5.854e-28
Identity = 14/38 (36.84%), Postives = 20/38 (52.63%), Query Frame = 3 
Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W  + +CE  F   W+L    KW+P+  +TY  RL  R
Sbjct:  213 WLTSVICEIWFAVSWVLDQFPKWSPINRETYIDRLSAR 250
The following BLAST results are available for this feature:
BLAST of CK934499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA6_ORYSJ1.894e-2960.71Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA2_ORYSJ2.467e-2960.71Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI2.467e-2960.71Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA1_ARATH5.443e-2961.90Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESA3_ORYSJ1.563e-2860.71Probable cellulose synthase A catalytic subunit 3 ... [more]
CESAA_ARATH2.651e-2860.71Probable cellulose synthase A catalytic subunit 10... [more]
CESA5_ORYSJ3.449e-2860.71Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI3.449e-2860.71Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA3_ARATH4.492e-2860.71Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA8_ARATH5.854e-2860.71Cellulose synthase A catalytic subunit 8 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_D07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934499 ID=CK934499; Name=CK934499; organism=Citrus sinensis; type=EST; length=810bp
GGGACATCTATTAATGCCGAAACACCAAAAATAAAAAAAACGAGTACTTG
TTTTTCAAGCTCATGGCCAATACAAAGTCGTCATGTCTCCCTCTATACGA
AAAAGTTTTTCATAAAAACACATATCATAGGGCTTTAGATGTTATCATCT
TGTTCCTTCTTCTATGTCTGCTCTTCTATCGGCTCTCAACGTTGAAGAAT
CATGGATTTGCTTGGTTTCTTGCTTTTCTATGTGAGTCTTGTTTTACTTT
CATCTGGATTCTCATCGTCAACTGCAAGTGGACTCCTTTGACCTACAAAA
CATATCCCCAACGTCTCCAAGAAAGGTAACAAATCAAATAACGTTAGCAT
TAATAATTTCCGCATCATTTGCAATTGTCTTTGTCATTTTGCAAGTTACT
ACACACACACACACACACACATGTGTACGACTCAACAGGATACAGGAGCT
GCCCCCAGTGGACATGTTTGTGACAACTGCTGATGCTGAACTCGAGCCGC
CAATCATCACTGTAAACACAGTGCTGTCTTTGTTGGCAGTTGATTATCCA
GTTCACAAGCTCGCTTGCTATGTTTCTGATGATGCCTGCTCACCTCTCAA
TTTCTACTCTCTTGTTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCAT
TCTGTAAAAAGTATAATGTTCAAATTAGAGCTCCCTTTAGATACTTCCCA
GATAGTGAGCCGTCCGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGAA
AAACATGAAGGAGGAATGACTGTTTTCTCCAATACAGAACGCATGAATCA
TCCAACAATA
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