CK934499 | Citrus Genome Database

Overview


Name	CK934499
Unique Name	CK934499
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	810

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK934499_ssr401	microsatellite	CK934499_ssr401:401..420.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1691	contig	Csv1_Contig1691:1..810.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.908e-28
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 2

Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L P+D+FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F +L E ++FA+ WVPFCKK+N++ RAP  YF
Sbjct:  347 QLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYF 430

HSP 2 Score: 33.4982 bits (75), Expect = 9.908e-28
Identity = 14/38 (36.84%), Postives = 20/38 (52.63%), Query Frame = 3

Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W ++ +CE  F   W+L    KW P+  +TY  RL  R
Sbjct:  301 WLVSVICEIWFALSWLLDQFPKWYPINRETYLDRLALR 338

[Close]

BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.908e-28
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 2

Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L P+D+FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F +L E ++FA+ WVPFCKK+N++ RAP  YF
Sbjct:  347 QLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYF 430

HSP 2 Score: 33.4982 bits (75), Expect = 9.908e-28
Identity = 14/38 (36.84%), Postives = 20/38 (52.63%), Query Frame = 3

Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W ++ +CE  F   W+L    KW P+  +TY  RL  R
Sbjct:  301 WLVSVICEIWFALSWLLDQFPKWYPINRETYLDRLALR 338

[Close]

BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.679e-27
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 2

Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L  VD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FA+ WVPF KKYN++ RAP  YF
Sbjct:  351 QLAAVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFVKKYNIEPRAPEWYF 434

HSP 2 Score: 35.4242 bits (80), Expect = 1.679e-27
Identity = 16/38 (42.11%), Postives = 20/38 (52.63%), Query Frame = 3

Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W L+ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  305 WLLSVICEIWFALSWILDQFPKWFPINRETYLDRLALR 342

[Close]

BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.798e-27
Identity = 51/84 (60.71%), Postives = 64/84 (76.19%), Query Frame = 2

Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            EL  VD+FV+T D   EPP+IT NTVLS+LAVDYPV ++ACYVSDD  + L F +L E ++FA+ WVPFCKKY ++ RAP  YF
Sbjct:  339 ELAGVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDRVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYTIEPRAPEWYF 422

HSP 2 Score: 33.8834 bits (76), Expect = 1.798e-27
Identity = 14/38 (36.84%), Postives = 20/38 (52.63%), Query Frame = 3

Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W ++ +CE  F   W+L    KW P+  +TY  RL  R
Sbjct:  293 WLISVICEIWFAVSWVLDQFPKWYPIERETYLDRLSLR 330

HSP 3 Score: 20.4014 bits (41), Expect = 1.798e-27
Identity = 11/45 (24.44%), Postives = 21/45 (46.67%), Query Frame = 1

Query:    1 GTSINAETPKIKKTSTCFSSSWPIQSRHVSLYTKKFFIKTHIIGL 135
            G   +A+ P + +     S   PI+S  ++ Y     ++  I+GL
Sbjct:  232 GDGDDADIPMMDEGRQPLSRKVPIKSSKINPYRMLIVLRLVILGL 276

[Close]

BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.185e-27
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 2

Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            EL PVD+FV+T D   EPP+IT NTVLS+LAVDYPV K+ACYVSDD  + L F +L   ++FA+ WVPFCKK++++ RAP  YF
Sbjct:  357 ELAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSYTAEFARKWVPFCKKFSIEPRAPEWYF 440

HSP 2 Score: 33.113 bits (74), Expect = 2.185e-27
Identity = 15/38 (39.47%), Postives = 19/38 (50.00%), Query Frame = 3

Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W  + +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  311 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLR 348

[Close]

BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.343e-26
Identity = 48/84 (57.14%), Postives = 68/84 (80.95%), Query Frame = 2

Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +LP +D+FV+TAD E EPP++T NT+LS+LAVDYPV K++CY+SDD  + L+F ++ EA+ FA LWVPFC+K+N++ R P  YF
Sbjct:  352 DLPGIDLFVSTADPEKEPPLVTANTILSILAVDYPVEKVSCYLSDDGGALLSFEAMAEAASFADLWVPFCRKHNIEPRNPDSYF 435

HSP 2 Score: 26.9498 bits (58), Expect = 2.343e-26
Identity = 12/38 (31.58%), Postives = 20/38 (52.63%), Query Frame = 3

Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W ++ +CE  F F WIL    K  P+   T  + L+++
Sbjct:  301 WLMSIICELWFGFSWILDQIPKLCPINRSTDLEVLRDK 338

[Close]

BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.198e-26
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 2

Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRY 694
            +LP +D+FV TAD  +EPP++ VNTVLS+ A+DYP  KLA Y+SDD  S L FY+L EA++FAK WVPFCKK+NV+  +P  Y
Sbjct:  107 DLPRLDVFVCTADPVIEPPLLVVNTVLSVTALDYPPEKLAVYLSDDGGSELTFYALTEAAEFAKTWVPFCKKFNVEPTSPAAY 189

HSP 2 Score: 31.187 bits (69), Expect = 5.198e-26
Identity = 11/38 (28.95%), Postives = 19/38 (50.00%), Query Frame = 3

Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            WF+ F+ E  F   W++  + +W P+    +  RL  R
Sbjct:   66 WFVMFIVEIWFGLYWVVTQSSRWNPVWRFPFSDRLSRR 103

[Close]

BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.509e-25
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 2

Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +LP +DMFV+TAD E EPP++T NT+LS+LA DYPV KLACYVSDD  + L F ++ EA+ FA +WVPFC+K+N++ R P  YF
Sbjct:  374 DLPGLDMFVSTADPEKEPPLVTSNTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYF 457

HSP 2 Score: 22.7126 bits (47), Expect = 2.509e-25
Identity = 11/38 (28.95%), Postives = 18/38 (47.37%), Query Frame = 3

Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W ++ +CE  F   W+L    K  P+   T    L+E+
Sbjct:  323 WGMSVVCELWFALSWLLDQLPKLCPINRATDLNVLKEK 360

[Close]

BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.708e-24
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 2

Query:  449 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            L PVD FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F SL E ++FA+ WVPFCKKY+++ RAP  YF
Sbjct:  264 LAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYF 346

[Close]

BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.708e-24
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 2

Query:  449 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            L PVD FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F SL E ++FA+ WVPFCKKY+++ RAP  YF
Sbjct:  264 LAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYF 346

The following BLAST results are available for this feature:

BLAST of CK934499 vs. ExPASy Swiss-Prot

BLAST of CK934499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
CESA1_ORYSJ	9.908e-28	59.52	Probable cellulose synthase A catalytic subunit 1 ...	[more]
CESA1_ORYSI	9.908e-28	59.52	Probable cellulose synthase A catalytic subunit 1 ...	[more]
CESA8_ORYSJ	1.679e-27	59.52	Probable cellulose synthase A catalytic subunit 8 ...	[more]
CESA5_ARATH	1.798e-27	60.71	Cellulose synthase A catalytic subunit 5 [UDP-form...	[more]
CESA9_ARATH	2.185e-27	60.71	Probable cellulose synthase A catalytic subunit 9 ...	[more]
CSLD4_ARATH	2.343e-26	57.14	Cellulose synthase-like protein D4 OS=Arabidopsis ...	[more]
CSLE1_ARATH	5.198e-26	59.04	Cellulose synthase-like protein E1 OS=Arabidopsis ...	[more]
CSLD3_ARATH	2.509e-25	59.52	Cellulose synthase-like protein D3 OS=Arabidopsis ...	[more]
CESA4_ORYSJ	1.708e-24	62.65	Cellulose synthase A catalytic subunit 4 [UDP-form...	[more]
CESA4_ORYSI	1.708e-24	62.65	Cellulose synthase A catalytic subunit 4 [UDP-form...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004258_D07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_D07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934499 ID=CK934499; Name=CK934499; organism=Citrus sinensis; type=EST; length=810bp
GGGACATCTATTAATGCCGAAACACCAAAAATAAAAAAAACGAGTACTTG
TTTTTCAAGCTCATGGCCAATACAAAGTCGTCATGTCTCCCTCTATACGA
AAAAGTTTTTCATAAAAACACATATCATAGGGCTTTAGATGTTATCATCT
TGTTCCTTCTTCTATGTCTGCTCTTCTATCGGCTCTCAACGTTGAAGAAT
CATGGATTTGCTTGGTTTCTTGCTTTTCTATGTGAGTCTTGTTTTACTTT
CATCTGGATTCTCATCGTCAACTGCAAGTGGACTCCTTTGACCTACAAAA
CATATCCCCAACGTCTCCAAGAAAGGTAACAAATCAAATAACGTTAGCAT
TAATAATTTCCGCATCATTTGCAATTGTCTTTGTCATTTTGCAAGTTACT
ACACACACACACACACACACATGTGTACGACTCAACAGGATACAGGAGCT
GCCCCCAGTGGACATGTTTGTGACAACTGCTGATGCTGAACTCGAGCCGC
CAATCATCACTGTAAACACAGTGCTGTCTTTGTTGGCAGTTGATTATCCA
GTTCACAAGCTCGCTTGCTATGTTTCTGATGATGCCTGCTCACCTCTCAA
TTTCTACTCTCTTGTTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCAT
TCTGTAAAAAGTATAATGTTCAAATTAGAGCTCCCTTTAGATACTTCCCA
GATAGTGAGCCGTCCGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGAA
AAACATGAAGGAGGAATGACTGTTTTCTCCAATACAGAACGCATGAATCA
TCCAACAATA