CK934499

Overview
NameCK934499
Unique NameCK934499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934499_ssr401 microsatellite CK934499_ssr401:401..420. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1691 contig Csv1_Contig1691:1..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.015e-21
Identity = 47/84 (55.95%), Postives = 65/84 (77.38%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            ELP VD+FVTT D   EP + TVN++LS+LA DYPV + ACY+SDD  + +++ ++VE +KFA+LWVPFC+K+ V+ RAP  YF
Sbjct:  174 ELPGVDVFVTTVDPVDEPILYTVNSILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRAPESYF 257
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.938e-21
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 2 
Query:  443 QELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            ++ P +D+F+ TAD   EPP++ VNT LS++A +YP  K++ YVSDD  S L F++L+EA+KF+K W+PFCKK NVQ R+P  YF
Sbjct:   96 EDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTFFALIEAAKFSKQWLPFCKKNNVQDRSPEVYF 180
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.938e-21
Identity = 46/84 (54.76%), Postives = 65/84 (77.38%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +LP VD+FVTT D   EP + TVNT+LS+LA DYPV + ACY+SDD  + +++ ++VE +KFA+LWVPFC+K+ V+ R+P  YF
Sbjct:  168 DLPGVDVFVTTVDPVDEPILYTVNTILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRSPENYF 251
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.938e-21
Identity = 46/84 (54.76%), Postives = 65/84 (77.38%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +LP VD+FVTT D   EP + TVNT+LS+LA DYPV + ACY+SDD  + +++ ++VE +KFA+LWVPFC+K+ V+ R+P  YF
Sbjct:  138 DLPGVDVFVTTVDPVDEPILYTVNTILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRSPENYF 221
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.265e-21
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +LP +D+F++TAD   EP ++T NT+LS+LA +YPV KL  Y+SDD  + L F S+ EA  FAK+WVPFC+K++++ R P  YF
Sbjct:  235 DLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYF 318

HSP 2 Score: 24.6386 bits (52), Expect = 4.265e-21
Identity = 11/38 (28.95%), Postives = 18/38 (47.37%), Query Frame = 3 
Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W ++ +CE  F F W+L    K  P+        L+E+
Sbjct:  184 WGISIVCEFWFAFSWLLDQMPKLNPINRAADLAALKEK 221
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.265e-21
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 2 
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +LP +D+F++TAD   EP ++T NT+LS+LA +YPV KL  Y+SDD  + L F S+ EA  FAK+WVPFC+K++++ R P  YF
Sbjct:  235 DLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYF 318

HSP 2 Score: 24.6386 bits (52), Expect = 4.265e-21
Identity = 11/38 (28.95%), Postives = 18/38 (47.37%), Query Frame = 3 
Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W ++ +CE  F F W+L    K  P+        L+E+
Sbjct:  184 WGISIVCEFWFAFSWLLDQMPKLNPINRAADLAALKEK 221
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.496e-20
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 2 
Query:  443 QELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            ++ P +D+F+ TAD   EPP++ VNT LS++A +YP HK++ YVSDD  S L  ++L+EA+KF+K W+PFCK  NVQ R+P  YF
Sbjct:   93 EDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSHKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKNNNVQDRSPEVYF 177
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.354e-20
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 2 
Query:  443 QELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            ++ P +D+F+ TAD   EPP++ VNT LS++A +YP  K++ YVSDD  S L  ++L+EA+KF+K W+PFCKK NVQ R+P  YF
Sbjct:  115 EDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKKNNVQDRSPEVYF 199
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.427e-20
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 2 
Query:  449 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            LP +D+F+ T D   EP I T+N +LS+LA DYPV K ACY+SDD  S +++  L+E +KFA LWVPFC+K++++ RAP  YF
Sbjct:  169 LPGLDVFINTVDPINEPMIYTMNAILSILAADYPVDKHACYLSDDGGSIIHYDGLLETAKFAALWVPFCRKHSIEPRAPESYF 251
[Close]
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.699e-20
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 2 
Query:  449 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            LP +D+FVTTAD   EP + T+N VLS+LA DYPV + ACY+SDD+ + + + +LVE +KFA LWVPFC+K+ ++ R+P  YF
Sbjct:  167 LPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249
The following BLAST results are available for this feature:
BLAST of CK934499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF4_ORYSJ3.015e-2155.95Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLG1_ARATH3.938e-2152.94Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLF2_ORYSJ3.938e-2154.76Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF1_ORYSJ3.938e-2154.76Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLD5_ORYSJ4.265e-2151.19Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI4.265e-2151.19Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLG2_ARATH1.496e-2051.76Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLG3_ARATH4.354e-2051.76Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLF8_ORYSJ7.427e-2053.01Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF3_ORYSJ9.699e-2054.22Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_D07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934499 ID=CK934499; Name=CK934499; organism=Citrus sinensis; type=EST; length=810bp
GGGACATCTATTAATGCCGAAACACCAAAAATAAAAAAAACGAGTACTTG
TTTTTCAAGCTCATGGCCAATACAAAGTCGTCATGTCTCCCTCTATACGA
AAAAGTTTTTCATAAAAACACATATCATAGGGCTTTAGATGTTATCATCT
TGTTCCTTCTTCTATGTCTGCTCTTCTATCGGCTCTCAACGTTGAAGAAT
CATGGATTTGCTTGGTTTCTTGCTTTTCTATGTGAGTCTTGTTTTACTTT
CATCTGGATTCTCATCGTCAACTGCAAGTGGACTCCTTTGACCTACAAAA
CATATCCCCAACGTCTCCAAGAAAGGTAACAAATCAAATAACGTTAGCAT
TAATAATTTCCGCATCATTTGCAATTGTCTTTGTCATTTTGCAAGTTACT
ACACACACACACACACACACATGTGTACGACTCAACAGGATACAGGAGCT
GCCCCCAGTGGACATGTTTGTGACAACTGCTGATGCTGAACTCGAGCCGC
CAATCATCACTGTAAACACAGTGCTGTCTTTGTTGGCAGTTGATTATCCA
GTTCACAAGCTCGCTTGCTATGTTTCTGATGATGCCTGCTCACCTCTCAA
TTTCTACTCTCTTGTTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCAT
TCTGTAAAAAGTATAATGTTCAAATTAGAGCTCCCTTTAGATACTTCCCA
GATAGTGAGCCGTCCGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGAA
AAACATGAAGGAGGAATGACTGTTTTCTCCAATACAGAACGCATGAATCA
TCCAACAATA
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